Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H01
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           90   9e-19
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    35   0.034
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    32   0.24 
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   0.97 
05_06_0197 - 26297917-26299839                                         27   6.9  
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20...    27   6.9  
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    27   9.1  
02_02_0400 + 9836045-9837115,9837474-9838577                           27   9.1  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 89.8 bits (213), Expect = 9e-19
 Identities = 41/59 (69%), Positives = 47/59 (79%)
 Frame = +1

Query: 256 GKVHGSLARAGKVKGQTPKVEKQQKKXXXTGRAKRTIQYNRRFVNVVQTFGRRRGPNSN 432
           GKVHGSLARAGKV+GQTPKV KQ KK    GRA + +QYNRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 34.7 bits (76), Expect = 0.034
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 62  RAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWSSFXM 193
           +A+  RP    PG+HW++Q    YS CS    P  I MW+   +
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWNELLL 410


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 140  SKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHSC 39
            S + N+ LD T+  ++ D Q+V  LP D   HSC
Sbjct: 1455 SANKNSLLDQTSENVSTDHQEVSMLPQDQHYHSC 1488


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 86  RQWPGVHWSDQGTHSY 133
           R WPG+HWSD  T  Y
Sbjct: 51  RIWPGLHWSDSSTPLY 66


>05_06_0197 - 26297917-26299839
          Length = 640

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 244 PLLGGKVHGSLARAGKVKGQTPKVEKQQKKXXXTGRAKRTIQYNRRFVN-VVQTFGRRR 417
           P+L G V+GSL +A  + G   K  +  K+      A+  +++     N VV  FGR R
Sbjct: 252 PILDGIVYGSLMKAYFLMGMEEKAMECYKEVLG---AESEVRFGAESYNGVVDAFGRNR 307


>02_01_0033 +
           202703-202705,203397-203458,203566-203665,203875-203916,
           204264-204305,204437-204589,206559-207221
          Length = 354

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 382 IFCCTELYA*HGQXXX-SFFVVFPLWGFVL*LYLHEPKIRALYHQAMAL*GLV 227
           I C   +YA  G+          P WG V  L L  P  + ++HQ++A  G +
Sbjct: 259 IQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFI 311


>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 55  ISEGNRHTSWTSMARS 102
           +S+GN H  WT+MA+S
Sbjct: 421 LSDGNGHVLWTTMAKS 436


>02_02_0400 + 9836045-9837115,9837474-9838577
          Length = 724

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 368 STTEDLSTLCRPSDVVAD 421
           S  E L+TLC P DVV D
Sbjct: 445 SAAEHLTTLCTPDDVVLD 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,641
Number of Sequences: 37544
Number of extensions: 187709
Number of successful extensions: 518
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)