Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_G23
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 84 8e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 84 1e-17
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 0.92
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 1.2
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 26 2.8
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 2.8
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 3.7
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 3.7
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 4.9
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 4.9
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 4.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 6.5
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 24 8.6
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 84.2 bits (199), Expect = 8e-18
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +3
Query: 108 KGITDKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 287
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 288 RRLGTHIRAKRKREELXNVLAQMR 359
+RLGT RAK K EEL +V+ R
Sbjct: 73 KRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 83.8 bits (198), Expect = 1e-17
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +3
Query: 108 KGITDKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 287
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 288 RRLGTHIRAKRKREELXNVLAQMR 359
+RLGT RAK K EEL +V+ R
Sbjct: 73 KRLGTLKRAKGKIEELTSVIQSSR 96
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 0.92
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 322 SVKNLXTCSLR*GRQPPRLITITI 393
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = +2
Query: 194 STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 295
+TR+C T+S+ EEG+ V+ +KR+ +++L+A I
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 2.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 386 MVMSLGGCLPHLSEHVXKFFTLPLGADVCAQSSLQELQSTLV 261
+V SL G L + +FFT PL ++VCA + + + ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 192 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 323
++RE +G + K + ++ K ALKF+ R+L H+R +R+
Sbjct: 35 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 126 AIXIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 242
++ RPA L+ L+T SKFV + V Y K ++
Sbjct: 23 SLLARPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.4 bits (53), Expect = 3.7
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 204 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELXNVLAQMR 359
++ HA ++ L+VSKD KRR+ THI + +R L V Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 4.9
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 407 FIYHLMVMVMSLGGCLPHLSEHVXKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSP 231
++ M + +GG + SEHV K F L V ++ ++ S + LK + S
Sbjct: 116 YLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSE 175
Query: 230 LLILS 216
LL ++
Sbjct: 176 LLTIT 180
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 4.9
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 265 LSFDTLSNSIALFSY*ACPTTS 200
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 253 TLSNSIALFSY*ACPTTSRTKSRTNLECF 167
T+++S LF+ A T+ TKS N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 24.6 bits (51), Expect = 6.5
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 240 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELXNVLAQM 356
+LLK ++ + K K+RL +I K K+EE+ +++A++
Sbjct: 75 QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 8.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +3
Query: 75 GHKTTKISAGRKGITDKAIXIRPARLKGL------QTKHSKFV-RDLVREVVGHAQYEKR 233
G+ K S TDK I+P LKGL TK ++ + RDL+R V+G E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788
Query: 234 AME 242
++
Sbjct: 789 EIK 791
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,242
Number of Sequences: 5004
Number of extensions: 25958
Number of successful extensions: 75
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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