Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_G22
(315 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal prote... 60 2e-10
AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal pro... 60 2e-10
U61946-2|AAC24387.1| 341|Caenorhabditis elegans Serpentine rece... 28 1.6
Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical pr... 27 2.1
U61952-10|AAQ01532.2| 217|Caenorhabditis elegans Hypothetical p... 27 3.8
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical... 27 3.8
Z78019-1|CAB01456.1| 662|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z81110-3|CAB03257.1| 323|Caenorhabditis elegans Hypothetical pr... 25 8.7
U64846-2|AAG24112.1| 332|Caenorhabditis elegans Serpentine rece... 25 8.7
>U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 39 protein.
Length = 51
Score = 60.5 bits (140), Expect = 2e-10
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 97 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 186
P WVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22 PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal
protein L39 protein.
Length = 51
Score = 60.5 bits (140), Expect = 2e-10
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 97 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 186
P WVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22 PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>U61946-2|AAC24387.1| 341|Caenorhabditis elegans Serpentine
receptor, class h protein220 protein.
Length = 341
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 222 FYYIT-FNTFTSLQLELCPSPVTPLSVISNSVSCAHP 115
FYYIT F F + + + P P I S+ C HP
Sbjct: 147 FYYITAFLFFYPIYITMPPGPEHRKDFILKSIPCLHP 183
>Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical
protein Y41E3.14 protein.
Length = 329
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 213 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPAEEWVC--FVSAFWPI-CALIINV 46
I F T T + +C S ++ + I SV C+ YP E++ F W + CA+ I++
Sbjct: 72 IVFLTLTDMSATVCSSIISGVLYIKGSVFCS--YPTFEYIAGGFAINTWCMACAINISL 128
>Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical
protein F53B7.2 protein.
Length = 572
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = -1
Query: 219 YYITFNTFT---SLQLELCPSPVTPLSVISNSVSCAHPYPAEEWVCFVSAFWPICALII 52
YY F F L + C +T L + + HP+ A+ WV W I II
Sbjct: 155 YYPVFLWFAYPVGLSTQTCGVYLTVLVSVHRYLGVCHPFRAKRWVSGKPVKWAIIGSII 213
>U61952-10|AAQ01532.2| 217|Caenorhabditis elegans Hypothetical
protein F42A9.9 protein.
Length = 217
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 122 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 211
A +FD+T+ G +GQ +C L+ V+ +
Sbjct: 23 ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52
>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
protein Y43F8C.12 protein.
Length = 1119
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 237 LTLQGFYYITFNTFTSLQLELCPSPVTPLSVISNS 133
L L G++YI F T +Q L + +ISNS
Sbjct: 358 LILNGYFYIMFRMGTKIQTSLTAAVYKKTLLISNS 392
>Z78019-1|CAB01456.1| 662|Caenorhabditis elegans Hypothetical
protein ZK863.4 protein.
Length = 662
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 23 LFKMSAHKTFIINAQIGQKAETKQTHSSAG*GCAQETL-----FDITLRGVTGEGQSSSC 187
LFK A+ F A G+KA K+T SSA G + L DIT ++ + +
Sbjct: 390 LFKYYANFDFTNKAIYGKKAMQKKTLSSAHGGVEESPLMLMDPMDIT-HNISAKVTEDAV 448
Query: 188 KLVNVL 205
KL+N L
Sbjct: 449 KLLNGL 454
>Z81110-3|CAB03257.1| 323|Caenorhabditis elegans Hypothetical
protein T01D3.4 protein.
Length = 323
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 132 VSCAHPYPAEEWVCFVSAFWPICALIINVLWADILNNQ 19
V C + +C +S FW A+++N L+ +L N+
Sbjct: 49 VLCLSKSISNSIICIISLFWVGPAILLNNLFLPLLINK 86
>U64846-2|AAG24112.1| 332|Caenorhabditis elegans Serpentine
receptor, class t protein35 protein.
Length = 332
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 222 FYYITFNTFTSLQ-LEL--CPSPVTPLSVISNSVSCAHPY 112
F YI+FN + LE+ C + VTP V+S V H Y
Sbjct: 289 FIYISFNDMIRKRFLEIFGCKNVVTPQFVVSPPVVVQHDY 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,252,174
Number of Sequences: 27780
Number of extensions: 89482
Number of successful extensions: 238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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