Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G21
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   1.8  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   7.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.5  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -2

Query: 197 FNIYVGVYXPIIKIIMIQCDNRII---WSSTNYSVFVKQSLLVVIPIRLKNVVN 45
           + + V +Y  +I + +  C  R     WS T+ ++F+  S+++++ +   NVVN
Sbjct: 135 YGLGVYLYSILILLFLSHCVLRCCLSNWSWTHRAMFILHSMVILMKLHSYNVVN 188


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 279 QYPKKRQNSTCIFILSNTLQPITTEI 202
           +Y    ++ST ++I + T++P+TTE+
Sbjct: 82  KYLSTYKSSTHLYIATETVRPVTTEL 107


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -2

Query: 170 PIIKIIMIQCDNRIIWSSTNYS-VFVKQSLLVVIPIRL 60
           P++++ M++C NR+I++ T+ S   +   L + +PIRL
Sbjct: 792 PLLQV-MLECFNRLIFTVTSTSQKELYAELCLTLPIRL 828



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 564  QSVXDITSNFLWEYFFRVKWPL 499
            Q + D  +N LW+Y F + W +
Sbjct: 2472 QMLSDADANKLWQYIFPLAWKI 2493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,247
Number of Sequences: 5004
Number of extensions: 55335
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)