Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G21
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-6|AAO21394.1|  496|Caenorhabditis elegans Phenylalanyl ...    28   5.0  
AF000263-5|AAG00015.1|  552|Caenorhabditis elegans Phenylalanyl ...    28   5.0  
Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF000263-6|AAO21394.1|  496|Caenorhabditis elegans Phenylalanyl (f)
           trna synthetaseprotein 1, isoform b protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 28  LAH-VSVFTTFFKRIGITTKR 87
           LAH + +FT FFK++GIT  R
Sbjct: 383 LAHLIGIFTEFFKKLGITNLR 403


>AF000263-5|AAG00015.1|  552|Caenorhabditis elegans Phenylalanyl (f)
           trna synthetaseprotein 1, isoform a protein.
          Length = 552

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 28  LAH-VSVFTTFFKRIGITTKR 87
           LAH + +FT FFK++GIT  R
Sbjct: 439 LAHLIGIFTEFFKKLGITNLR 459


>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical protein
            ZC376.6 protein.
          Length = 1152

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 179  VYXPIIKI--IMIQCDNRIIWSSTNYSVFVKQSLLVVIPIRLKNVVNTL 39
            V   IIKI  ++ +CD RI+ S  +++ FV+        +R++N + T+
Sbjct: 855  VLDDIIKIPSLLFRCDRRILSSPPHFNCFVRALNFFSKMVRIENRLKTM 903


>AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical
           protein ZK697.3 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -3

Query: 451 IXEHIGTKQRVIVLKIIFNQKFQYKY*MLWEQCTPAPF*QLPTPLTSFSLLFVXKMPPIS 272
           + E +G    +++  I+F  +   K  +LW    P     L  P++ F+ LF     PI 
Sbjct: 17  VLEALGLMTFILISTILFLIQLVNKRKLLWNSFPPYCIVILVAPISQFTFLFFHAFLPII 76

Query: 271 QKTTE 257
             + E
Sbjct: 77  LSSDE 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,746,201
Number of Sequences: 27780
Number of extensions: 311736
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)