Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G19
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   157   5e-40
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   156   2e-39
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.3  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   4.0  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.0  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   5.3  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   7.0  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    24   9.3  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  157 bits (382), Expect = 5e-40
 Identities = 75/114 (65%), Positives = 90/114 (78%)
 Frame = +3

Query: 57  MGRVRTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 236
           MGRVRTKT K+A+ ++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 237 LRHSQVRGISIKLQEXERXRRDNYVPXVSALEHDIIEVXPDTKDMLKMLDFNNI 398
           ++   VRGIS KLQE ER R+D YVP VS LE D I V  DTKDMLK L +++I
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  156 bits (378), Expect = 2e-39
 Identities = 74/114 (64%), Positives = 89/114 (78%)
 Frame = +3

Query: 57  MGRVRTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 236
           MGRVRTKT K+A+ ++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 237 LRHSQVRGISIKLQEXERXRRDNYVPXVSALEHDIIEVXPDTKDMLKMLDFNNI 398
           ++   VRGIS KLQE ER R+D YVP VS LE D + V  DTKDMLK L ++ I
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 193 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIXFAAFL 83
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 88  FLTVLVRTRPMAEVVQRCF 32
           F T L R  P++E+V RCF
Sbjct: 413 FKTSLYRDHPVSEIVGRCF 431


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 211 PAILFLRGLVGMIAISSHILLFVSK 137
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 69  GHDPWLKLYSAAFDK 25
           G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 165 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 257
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 192 LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEXERXRRDNYVPXVSALEHDIIEV 350
           +R +IA F    A H ++R   S+    ++ + E    R   Y+P +S    + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,614
Number of Sequences: 5004
Number of extensions: 26243
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)