Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_G16
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 62 2e-10
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 61 2e-10
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 61 2e-10
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 27 4.6
02_03_0411 - 18739279-18739902,18741471-18741671 27 4.6
05_07_0101 - 27690927-27691208,27691695-27692474 27 6.1
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 26 8.1
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172 26 8.1
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 61.7 bits (143), Expect = 2e-10
Identities = 27/38 (71%), Positives = 28/38 (73%)
Frame = +2
Query: 143 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 256
SR CR C N HGLIRKYGL CRQCFR A DIGF K+
Sbjct: 18 SRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55
Score = 27.9 bits (59), Expect = 2.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 90 MGHANIWYSHPR 125
MGH+N+W SHP+
Sbjct: 1 MGHSNVWNSHPK 12
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/37 (72%), Positives = 27/37 (72%)
Frame = +2
Query: 143 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 253
SR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 18 SRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
Score = 27.9 bits (59), Expect = 2.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 90 MGHANIWYSHPR 125
MGH+N+W SHP+
Sbjct: 1 MGHSNVWNSHPK 12
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/37 (72%), Positives = 27/37 (72%)
Frame = +2
Query: 143 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 253
SR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 18 SRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
Score = 27.9 bits (59), Expect = 2.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 90 MGHANIWYSHPR 125
MGH+N+W SHP+
Sbjct: 1 MGHSNVWNSHPK 12
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 92 GPRKYLVFSPSPDTDKESRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 256
G K + P DT+ E +HG I KY +N +Q + Y + + L
Sbjct: 237 GHYKGALDDPFVDTEPEELVVVPSDLKHGSIPKYVVNAIQQVLKSYPNGVNLSDL 291
>02_03_0411 - 18739279-18739902,18741471-18741671
Length = 274
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 95 PRKYLVFSPSPDTDKESRSCRSCSNRHG 178
PR +SPSP + S S R CS G
Sbjct: 86 PRSSSAYSPSPASRSASSSSRRCSRARG 113
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 177 PCLLEQDRHDRDSLSVSGEGENT 109
PCLL R DRD V+G GE+T
Sbjct: 190 PCLLPPGR-DRDECGVTGFGEHT 211
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 43 SNFVARLARNN--FNFLKWATQIFGILTLARYGQGI 144
SN RNN F FLKW + F + + G GI
Sbjct: 149 SNMELEFKRNNERFGFLKWGSTAFHNMLVVPPGSGI 184
>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
Length = 618
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 119 PSPDTDKESRSCRSC 163
P P +K+SRSC+SC
Sbjct: 87 PLPSDEKKSRSCQSC 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,438,977
Number of Sequences: 37544
Number of extensions: 134405
Number of successful extensions: 327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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