Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_G16
(368 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 73 5e-14
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 33 0.084
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 33 0.084
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 30 0.45
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 29 0.79
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z35600-2|CAA84663.1| 394|Caenorhabditis elegans Hypothetical pr... 28 2.4
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 27 3.2
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 27 3.2
Z81496-8|CAB04068.1| 498|Caenorhabditis elegans Hypothetical pr... 27 4.2
U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone... 27 4.2
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 27 4.2
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 27 4.2
AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear recep... 27 4.2
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 26 7.3
AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlec... 26 7.3
U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical p... 26 9.7
AL021487-2|CAA16353.1| 413|Caenorhabditis elegans Hypothetical ... 26 9.7
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 73.3 bits (172), Expect = 5e-14
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = +2
Query: 143 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 259
SRSCR C+ HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 18 SRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 90 MGHANIWYSHPRQ 128
MG N+W+SHPR+
Sbjct: 1 MGFQNLWFSHPRK 13
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 32.7 bits (71), Expect = 0.084
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 SPSPDT-DKESRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 253
S SP D + CR C R+ + +G++ICR C + + KK
Sbjct: 34 SSSPTVADPSNIHCRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 32.7 bits (71), Expect = 0.084
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 SPSPDT-DKESRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 253
S SP D + CR C R+ + +G++ICR C + + KK
Sbjct: 44 SSSPTVADPSNIHCRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 30.3 bits (65), Expect = 0.45
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 106 FGILTLARYGQ--GISVMPILLQQAWLNPQVRFEHMQTVLQRV 228
FGI +A+ + + +L Q W +P++RF+H+ LQ +
Sbjct: 63 FGIQNIAQVSEISASFTLDLLFSQIWHDPRLRFDHLTNCLQNL 105
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 29.5 bits (63), Expect = 0.79
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 151 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 252
M I + + WL+P ++F+H+ Q + H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical
protein ZK455.1 protein.
Length = 887
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 67 RNNFNFLKWATQIFGILTLARYGQGI 144
R FNFLKW ++ F L + G GI
Sbjct: 149 RERFNFLKWGSKAFDNLLIVPPGSGI 174
>Z35600-2|CAA84663.1| 394|Caenorhabditis elegans Hypothetical
protein F37A8.2 protein.
Length = 394
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 98 RKYLVFSPSPDTDKESRSCRSCSNRHGLIRKYGLNIC 208
R + SP+P+T+K ++S R+ S + LI Y ++C
Sbjct: 54 RNWAPLSPNPETEKSAKSLRNYST-NPLIPSYICDLC 89
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 98 RKYLVFSPSPDTDKESRSCRSCSNR 172
++ LV S S ++D+ESRS RS +N+
Sbjct: 920 KRRLVSSSSDESDQESRSTRSTTNK 944
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 98 RKYLVFSPSPDTDKESRSCRSCSNR 172
++ LV S S ++D+ESRS RS +N+
Sbjct: 920 KRRLVSSSSDESDQESRSTRSTTNK 944
>Z81496-8|CAB04068.1| 498|Caenorhabditis elegans Hypothetical
protein F09C6.8 protein.
Length = 498
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 119 PSPDTDKESRSCRSCSNRHGLIRKYGLNICRQC 217
PSP + + + +C+ C +R R YG + C C
Sbjct: 25 PSPSSKRPTENCKVCGDRPNNDR-YGASACLGC 56
>U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 22 protein.
Length = 579
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 119 PSPDTDKESRSCRSCSNRHGLIRKYGLNICRQC 217
PSP TD SRSC CS+ +G C+ C
Sbjct: 87 PSPLTD--SRSCHVCSSPTANTLHFGGRSCKAC 117
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 136 QGISVMPILLQQAWLNPQVRFEHMQTV--LQRVCS*HR-IQEAGLNGVXIIN 282
Q S M IL Q W +P + FEH + L + HR + L V I+N
Sbjct: 128 QSSSTMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVN 179
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 136 QGISVMPILLQQAWLNPQVRFEHMQTV--LQRVCS*HR-IQEAGLNGVXIIN 282
Q S M IL Q W +P + FEH + L + HR + L V I+N
Sbjct: 128 QSSSTMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVN 179
>AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 555
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 119 PSPDTDKESRSCRSCSNRHGLIRKYGLNICRQC 217
PSP TD SRSC CS+ +G C+ C
Sbjct: 63 PSPLTD--SRSCHVCSSPTANTLHFGGRSCKAC 93
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 206 ICSNRTCGLSHACWSRIGMTEIPC 135
IC+N TCG++ C R MT C
Sbjct: 3140 ICANSTCGMNGQCVPR-NMTHYTC 3162
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 206 ICSNRTCGLSHACWSRIGMTEIPC 135
IC+N TCG++ C R MT C
Sbjct: 3140 ICANSTCGMNGQCVPR-NMTHYTC 3162
>AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlecan
protein.
Length = 925
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 206 ICSNRTCGLSHACWSRIGMTEIPC 135
IC+N TCG++ C R MT C
Sbjct: 690 ICANSTCGMNGQCVPR-NMTHYTC 712
>U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical
protein C37C3.2c protein.
Length = 413
Score = 25.8 bits (54), Expect = 9.7
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = -3
Query: 219 KHCLHMFKPYLRIKPCLLEQDRHDRDSLSVSGEGENTKYLRGPF*EIKVVSR*ASNKVRY 40
KH + I L ++D + DSL GE ++KY+ F + K++ S V
Sbjct: 311 KHEAELLSKSAHIIKSLYDEDVCEEDSLISWGEKPSSKYVSKSFAK-KIIEN--SQPVLN 367
Query: 39 TFKMAER*TEK 7
K AE TEK
Sbjct: 368 WLKEAEEETEK 378
>AL021487-2|CAA16353.1| 413|Caenorhabditis elegans Hypothetical
protein Y45F10B.2 protein.
Length = 413
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 98 RKYLVFSPSPDTDKESRSCRSCSNRHGLIRKYGLNIC 208
R + SP+P+T K ++S R+ S + LI Y ++C
Sbjct: 55 RNWAPLSPNPETVKSAKSLRNYST-NPLIPSYICDLC 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,219,133
Number of Sequences: 27780
Number of extensions: 114969
Number of successful extensions: 330
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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