Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G16
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.5  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   2.6  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   2.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 LLQQAWLNPQVRFEH 204
           LLQQ W +P++R+ +
Sbjct: 112 LLQQQWYDPRLRYSN 126


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 LLQQAWLNPQVRFEH 204
           LLQQ W +P++R+ +
Sbjct: 112 LLQQQWYDPRLRYSN 126


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 LLQQAWLNPQVRFEH 204
           LLQQ W +P++R+ +
Sbjct: 163 LLQQQWYDPRLRYSN 177


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 LLQQAWLNPQVRFEH 204
           LLQQ W +P++R+ +
Sbjct: 112 LLQQQWYDPRLRYSN 126


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 73  CFSLSEQQS*IHLQDGGTLNXKK 5
           CF     Q  +H  DG TLN +K
Sbjct: 54  CFEACVFQK-LHFMDGNTLNVEK 75


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 73  CFSLSEQQS*IHLQDGGTLNXKK 5
           CF     Q  +H  DG TLN +K
Sbjct: 54  CFEACVFQK-LHFMDGNTLNVEK 75


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
 Frame = +2

Query: 92  GPRKYLVFSPSPDT-----DKESRSCRSCSNRHGLI--RKY-GLNICRQCFREYAHDIGF 247
           GP KY + S  P+      D  + +  S +N+  L     Y  LN+  Q    Y+H + F
Sbjct: 410 GPAKYYLKSRDPERTPYQWDNSTSAGFSQTNKTWLPVNENYKSLNLAAQKREYYSHYVAF 469

Query: 248 KKL 256
           K L
Sbjct: 470 KSL 472


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
 Frame = +3

Query: 117 HPRQIRTRNLG-----HADPAPT 170
           HPR++   NLG     H  PA T
Sbjct: 429 HPRELEAVNLGSACRIHGSPATT 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,888
Number of Sequences: 438
Number of extensions: 1416
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)