Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G14
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    48   1e-06
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   2.9  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   5.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   6.7  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 27/101 (26%), Positives = 52/101 (51%)
 Frame = +3

Query: 87  IKCLKCRTKLIDDISLITNQNFQCDPQKCNSYDIKKVIYLMEDKLPEWIKSRIEKEQWTK 266
           ++C KCR  L     L++++     P+  N+Y   +  +   + +  W++  +E     +
Sbjct: 232 LRCKKCRFVLASSDYLVSHE-----PKDENNYSHTRCTHYFLEPI-RWMQPELELGN-LE 284

Query: 267 GRLNCEKCSCRIGSFDYISGRKCECGETVLPPVHFTSSQVD 389
           GR +C KC+ +IGS+ +  G +C C + V P +    S+VD
Sbjct: 285 GRFDCPKCNSKIGSYKW-QGLQCSCLQWVCPALSILQSRVD 324


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 69  SCKSNAIKCLKCRTKLIDDI-SLITNQNFQCDPQKCNSYDIKKVIYLMEDK 218
           SCK N   C++ R+ LI  + SLI  Q      ++ +   ++ +I  +E+K
Sbjct: 203 SCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEESLKSVESIISNLENK 253


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 108  TKLIDDISLITNQNFQCDPQKCNSYDIKKVIYLMEDKLPEWIK 236
            T+ + D+ L+ +     D  + +SY    V+  M  KLP  +K
Sbjct: 1119 TRCLKDLKLLRSNLMAIDDSRVSSYFTDSVLLSMAKKLPRNVK 1161


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 505 IKKMFIK***KLIISNELFSFHSVFDLFNFNAFS 404
           +KK FIK   K IIS    SFH++  L     FS
Sbjct: 71  LKKKFIKSLSKKIISYHFISFHTIVVLLLLPPFS 104


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 313 TIFLGENVNVVKQFYHQCTLLAAKWIDLYYLKM 411
           T+     VN+++QFY   + L  +W+    LK+
Sbjct: 179 TLIRDTRVNILEQFYRSLSPLELRWLIPILLKV 211


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 288 CSCR-IGSFDYISGRKCECGETVLPPVHF 371
           C+C  +G  D  +  +CEC + +  P HF
Sbjct: 260 CNCSSLGGCDLNNPSRCECLDDLDEPTHF 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,828
Number of Sequences: 5004
Number of extensions: 39505
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)