Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_G14
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0281 + 8536494-8536920,8537184-8537338 46 2e-05
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 40 9e-04
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 40 9e-04
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 32 0.31
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 31 0.72
04_04_1084 + 30716247-30716345,30716762-30716937,30717755-307179... 29 1.7
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 28 3.8
01_06_1710 - 39342842-39343069,39344004-39344165,39344275-393445... 28 5.1
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 27 6.7
12_01_0066 + 562118-562459,562656-562724,562819-562923,563624-56... 27 8.8
11_01_0063 + 484011-484349,484546-484614,484701-484805,485503-48... 27 8.8
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 27 8.8
>02_02_0281 + 8536494-8536920,8537184-8537338
Length = 193
Score = 45.6 bits (103), Expect = 2e-05
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Frame = +3
Query: 90 KCLKCRTKLIDDISLITNQNFQCDPQKCNSYDIKKVIYLMEDKLPEWIKSRIEKEQWTK- 266
+C +CRT + + ++T++ + +KC + K Y +++K PE +E +W +
Sbjct: 88 RCKRCRTLVATEGYVVTHKVGR--GEKCFATRKK---YHVDEKEPECTCLFVEPLKWMQP 142
Query: 267 -------GRLNCEKCSCRIGSFDYISGRKCECGETVLPPVHFTSSQVDR 392
G++ C KC+ R+G F + +G +C CG V P S++D+
Sbjct: 143 VVEGYISGKIACRKCNSRLGQFHW-AGMQCSCGAWVNPAFQLVKSKIDQ 190
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 264 KGRLNCEKCSCRIGSFDYISGRKCECGETVLPPVHFTSSQVD 389
+G+L+C C R+G F++ SG +C CG + P + S+VD
Sbjct: 312 EGKLSCIHCGARLGYFNW-SGIQCNCGSWITPAFQISKSKVD 352
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 264 KGRLNCEKCSCRIGSFDYISGRKCECGETVLPPVHFTSSQVD 389
+G+L+C C R+G F++ SG +C CG + P + S+VD
Sbjct: 312 EGKLSCIHCGARLGYFNW-SGIQCNCGSWITPAFQISKSKVD 352
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 31.9 bits (69), Expect = 0.31
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = +3
Query: 105 RTKLIDDISLITNQNFQCDPQKCNSYDIKKVIYLMEDKLPEWIKSRIEKEQWTKGRLNCE 284
+ +++ D L+TN F C Q N +D+++V ++DK + ++ + +
Sbjct: 288 QVQIVGDDLLVTNPTFPCWLQYSNQFDLQRVAKAIKDKACNALLLKVNQIGSVTESIEAV 347
Query: 285 KCSCRIGSFDYISGRKCECGETVL 356
K S R G S R E +T +
Sbjct: 348 KMSKRAGWGVMTSHRSGETEDTFI 371
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 30.7 bits (66), Expect = 0.72
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 384 LGC**SALVVKLFHHIHIFSQKYSRMIRFCNCIFHSL 274
LG S L + LF HI + +Y RM+ F +C+ SL
Sbjct: 367 LGADFSKLFIALFLHILVTEYRYIRMLVFTHCLLSSL 403
>04_04_1084 +
30716247-30716345,30716762-30716937,30717755-30717970,
30718070-30718212,30718682-30718884
Length = 278
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 366 ALVVKLFHHIHIFSQKYSRMIRFCNCIFHSLIYLW 262
AL++KL + +FSQ+ S+ F +F S+IYL+
Sbjct: 131 ALIIKLAAVVFLFSQEGSKQRLFLLILFASVIYLY 165
>08_02_1426 +
27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 186 IKKVIYLMEDKLPEWIKSRIEKEQWTKGRLNC 281
++ V Y +ED L +++ R+EK W + RL+C
Sbjct: 72 VRDVAYDVEDCLQDYVV-RLEKPSWWRRRLSC 102
>01_06_1710 -
39342842-39343069,39344004-39344165,39344275-39344518,
39344661-39344674
Length = 215
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 462 VMNYFLFIQC---LIYLILMHFQII*VYPLG 379
V++ FLF C LIYLI +HF + PLG
Sbjct: 88 VISMFLFFVCSPILIYLIDLHFHVSKEQPLG 118
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 192 KVIYLMEDKLPEWIKSRIEK-EQWTKGRLNCEKCSC 296
K + LME PE I I QW + C+KC C
Sbjct: 869 KGVSLMELFTPEQIHEHINSLRQWIGQWVQCDKCEC 904
>12_01_0066 +
562118-562459,562656-562724,562819-562923,563624-563743,
564085-564174,564223-564375
Length = 292
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 243 IEKEQWTKGRLNCEKCSCRIGSFDY 317
I++E+W K R + EK ++ FDY
Sbjct: 264 IQREEWAKSRQDVEKHFRKLRDFDY 288
>11_01_0063 +
484011-484349,484546-484614,484701-484805,485503-485622,
485975-486064,486115-486267
Length = 291
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 243 IEKEQWTKGRLNCEKCSCRIGSFDY 317
I++E+W K R + EK ++ FDY
Sbjct: 263 IQREEWAKSRQDVEKHFRKLRDFDY 287
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 102 CRTKLIDDISLITNQNFQCDPQKCNSYDIKKVI 200
C+T L+DD N+ +K +KKV+
Sbjct: 570 CKTSLLDDFDFYDNREKMMQERKAKHQQLKKVV 602
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,865
Number of Sequences: 37544
Number of extensions: 217824
Number of successful extensions: 457
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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