Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G14
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    28   4.5  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81074-11|CAB03045.2|  562|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 264 KGRLNCEKCSC--RIGSFDYISGRKCEC 341
           +G  NC +C C  R    + ISG  CEC
Sbjct: 538 RGVCNCGRCECNPRANPEEQISGEFCEC 565


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 264 KGRLNCEKCSC--RIGSFDYISGRKCEC 341
           +G  NC +C C  R    + ISG  CEC
Sbjct: 538 RGVCNCGRCECNPRANPEEQISGEFCEC 565


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 210 EDKLPEWIKSRIEKEQWTKGRLNCEKCSCRIGSFDYISGRKCECG 344
           ++ +  ++K++  +++W    L+  + S RI S  Y+ G+K +CG
Sbjct: 483 KELVSSYMKNQGPQKKWENMPLH--ETSIRINSLFYVDGKKIDCG 525


>Z81074-11|CAB03045.2|  562|Caenorhabditis elegans Hypothetical
           protein F32B6.10 protein.
          Length = 562

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 211 KTNCPNGLSPELKKNNGPKVD*TVKN 288
           K N PN    +LKKNN P  +  +KN
Sbjct: 6   KKNLPNYADNKLKKNNDPGKEEAIKN 31


>Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical
           protein F47G9.4 protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 63  MISCKSNAIKCLKCRTKLIDDISLITNQNFQCDPQKCNSYD 185
           +++ +  A + L    +L+  +S I N N   DP++C+  D
Sbjct: 455 ILNLRETARQILTAAKQLVPYVSCILNMNAMIDPKRCHPPD 495


>AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical
           protein T24C4.9 protein.
          Length = 105

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 351 LFHHIHIFSQKYSRMIRFCNCIFHSLIYLWSIVLFQFWT*SIRAICL 211
           LFH +HIF    S M+   + I  S  YL S+ L  ++T  +  +C+
Sbjct: 11  LFHIVHIFVCSVSSMV-LRSVIVLSAGYLASLALMGYFTIKMTLMCV 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,820,720
Number of Sequences: 27780
Number of extensions: 226209
Number of successful extensions: 688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)