Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G12
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.33 
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    28   1.0  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   1.0  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    28   1.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.8  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.3  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +2

Query: 191 TINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGA 370
           TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR    +   IVG 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 371 GLMLMLIATPDN 406
            ++   + TP+N
Sbjct: 790 SVVARTVYTPNN 801


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 32  ICLFYL*LVKLEYCCCVILKAINIL 106
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 32  ICLFYL*LVKLEYCCCVILKAINIL 106
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFILLLLGLIYCSKIVVKAIPLI 152


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 32  ICLFYL*LVKLEYCCCVILKAINIL 106
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 NWWFQSILKAVDKGLKIYCIHVFFFYF 167
           NWW++S +     G+ ++   VF+++F
Sbjct: 553 NWWWRSFITPGFCGIYVFIFSVFYWFF 579


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -3

Query: 627 NSVINVPPRNSQL--PRSASIAAAEKHTNTRV--VPSRAVIMIDGSTTLTYS--SRGPML 466
           N+ + +PPR +     R +++  +    ++ V  VPS +   ++  TT   S  SR PML
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377

Query: 465 MPDVNPNPS 439
           M    P PS
Sbjct: 378 MNPSTPEPS 386


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 627 NSVINVPPRNSQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYS 484
           NS+++V   N    R  SI   E H+N  V+  R V+   G  +L  S
Sbjct: 528 NSILSVYDPNVSQHRVPSINGNESHSNVHVI--RQVVNSTGPVSLDQS 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,030
Number of Sequences: 5004
Number of extensions: 51106
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)