Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   113   2e-26
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   7.2  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   9.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  113 bits (272), Expect = 2e-26
 Identities = 66/155 (42%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
 Frame = +3

Query: 192 VGKAP-AANLPHVLRWYNQIASYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVD 368
           VG AP  A  P+  RWY QIA+Y  A        T P                     +D
Sbjct: 41  VGVAPDTAKYPNGARWYKQIATYDLA--------TLPGTAKEVSAYGPEGAAAAEEDEID 92

Query: 369 LFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQV 548
           LFGS                 + Y  KK+ KP  + KS + LDVKPWDDET M E+E  V
Sbjct: 93  LFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAV 151

Query: 549 RTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDK 653
           R+I+M+GL+WG SKLVPVG+G+NK QI  V+EDDK
Sbjct: 152 RSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDK 186



 Score = 29.1 bits (62), Expect = 0.59
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 119 NYLAEKSYVSGYTPSQAD 172
           ++L +KS++ GY PSQAD
Sbjct: 17  DFLLDKSFIEGYEPSQAD 34


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 590 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 483
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 304 PPVLNPRLPPQQRKTTMTT 360
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 444 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 539
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,596
Number of Sequences: 5004
Number of extensions: 42251
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)