Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_G05
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.3  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   5.3  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   5.3  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   7.0  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    25   9.2  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    25   9.2  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 35  ISFRSNYEDHYFLCFRCVVRGGVV 106
           +SFR+NY+++ FL   C  R  +V
Sbjct: 412 VSFRANYDNYIFLSLICETRAIIV 435


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 284 YVAQDQPRPVSWIRWHPSLLNT 349
           Y AQ Q RP S +RWH SLL+T
Sbjct: 191 YEAQ-QKRPFS-LRWHTSLLST 210


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 129 KQVKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNC 272
           K    D+ + K   +D T  + +PI   +         NE + NN NC
Sbjct: 69  KSSSHDSFKAKPKNYDSTSNSNEPISFNEPDSSNSHHNNESICNNDNC 116


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 421 YEYNLSKAMLLVPTINNVINYCFFSVQERRMP 326
           +  +L K ++     N +IN  FF+  ++RMP
Sbjct: 770 FSTSLEKTVINFENSNGIINNTFFNESKKRMP 801


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -2

Query: 469 CCNKIFQ*KASLICQYYE---YNLSKAMLLVPTINNVINYCF 353
           C  KIF+ K + IC+  E   + L KA L  P + N+    F
Sbjct: 505 CWGKIFKKKFTTICERIESTLHELVKASLQTPEVFNISQSLF 546



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 621  RGNYCIRYLLKIINYFVYSXYIS 553
            +G+ CI  LL II YF+   Y++
Sbjct: 1077 KGSRCINDLLVIIKYFLLDLYLN 1099


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 215 DRRETQVIR--KRVCHEQLQLRTQRYVAQDQPRPVSWIR 325
           DRR  Q+    K+VC + LQ+   R  A D+     W++
Sbjct: 875 DRRHVQLFADSKKVCQKWLQVMNSRSFALDRGTEKLWLQ 913


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 200 YLRWKDRRETQVIRKRVCHEQLQ----LRTQRYVAQDQPRPVSWIRWHPSLLNTEETIIN 367
           Y+  +DR+    I    C+E+LQ    L  +R ++++Q   V + RW     NT+   I 
Sbjct: 52  YIEERDRKMKYEIE---CNERLQGWKKLAIEREISEEQSGEVQFPRWIDEWANTKLGGIF 108

Query: 368 HVVYSR 385
             ++S+
Sbjct: 109 ERIFSK 114


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 200 YLRWKDRRETQVIRKRVCHEQLQ----LRTQRYVAQDQPRPVSWIRWHPSLLNTEETIIN 367
           Y+  +DR+    I    C+E+LQ    L  +R ++++Q   V + RW     NT+   I 
Sbjct: 52  YIEERDRKMKYEIE---CNERLQGWKKLAIEREISEEQSGEVQFPRWIDEWANTKLGGIF 108

Query: 368 HVVYSR 385
             ++S+
Sbjct: 109 ERIFSK 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,108
Number of Sequences: 5004
Number of extensions: 46393
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)