Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F24
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   121   6e-29
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   121   6e-29
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           25   7.3  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   9.6  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   9.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  121 bits (292), Expect = 6e-29
 Identities = 57/125 (45%), Positives = 76/125 (60%)
 Frame = +2

Query: 131 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHXLPRYGVKVGLTNYAAXYS 310
           KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S  LPRYG+K GL N+ A Y+
Sbjct: 41  KNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYA 100

Query: 311 TGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFRCYLDVGLXRTTTGARVF 490
           TG                              E +++GP  F+ +LDVGL RT+TG+RVF
Sbjct: 101 TGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVF 160

Query: 491 GAIKG 505
           GA+KG
Sbjct: 161 GAMKG 165



 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 25/36 (69%), Positives = 29/36 (80%)
 Frame = +1

Query: 10  MGFVKVVXNKQYFKRYQVKFKRRREGKTDYYARKRL 117
           M F+K V +  YF RYQ K++RRREGKTDYYARKRL
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRL 36


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  121 bits (292), Expect = 6e-29
 Identities = 57/125 (45%), Positives = 76/125 (60%)
 Frame = +2

Query: 131 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHXLPRYGVKVGLTNYAAXYS 310
           KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S  LPRYG+K GL N+ A Y+
Sbjct: 41  KNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYA 100

Query: 311 TGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFRCYLDVGLXRTTTGARVF 490
           TG                              E +++GP  F+ +LDVGL RT+TG+RVF
Sbjct: 101 TGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVF 160

Query: 491 GAIKG 505
           GA+KG
Sbjct: 161 GAMKG 165



 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 25/36 (69%), Positives = 29/36 (80%)
 Frame = +1

Query: 10  MGFVKVVXNKQYFKRYQVKFKRRREGKTDYYARKRL 117
           M F+K V +  YF RYQ K++RRREGKTDYYARKRL
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRL 36


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 341 EAVFVLIADQLNMXQHNLSDQPSHHNVAXHV 249
           EAV + + D  +    +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 111 FTSIIISFPFTTPLEFYLVPLEVLFVXHNFNESH 10
           F +I  SF   +PL FY  P+      H  N+SH
Sbjct: 17  FFNISSSFNEHSPLNFYDEPIYNFSSGHEENQSH 50


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 179 NKDVTCQVAYSRIEGDHIVCAAYSHXLPRYGVKVGLTNYAA 301
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,654
Number of Sequences: 5004
Number of extensions: 37232
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)