Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_F24
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 128 3e-30
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 128 3e-30
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 5.6
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 7.4
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470... 27 9.8
02_04_0381 - 22497519-22497769,22498157-22498247 27 9.8
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 128 bits (309), Expect = 3e-30
Identities = 66/128 (51%), Positives = 77/128 (60%)
Frame = +2
Query: 128 DKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHXLPRYGVKVGLTNYAAXY 307
DKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSH LPRYG++VGLTNYAA Y
Sbjct: 41 DKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAY 97
Query: 308 STGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFRCYLDVGLXRTTTGARV 487
TG +Y VEP D FR LDVGL RTTTG RV
Sbjct: 98 CTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRV 156
Query: 488 FGAIKGVL 511
FGA+KG L
Sbjct: 157 FGALKGAL 164
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = +1
Query: 13 GFVKVVXNKQYFKRYQVKFKRRREGKTDYYARKRL 117
GFVK Y KR+QVKFKRRR+GKTDY AR RL
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRL 37
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 128 bits (309), Expect = 3e-30
Identities = 66/128 (51%), Positives = 77/128 (60%)
Frame = +2
Query: 128 DKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHXLPRYGVKVGLTNYAAXY 307
DKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSH LPRYG++VGLTNYAA Y
Sbjct: 41 DKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAY 97
Query: 308 STGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFRCYLDVGLXRTTTGARV 487
TG +Y VEP D FR LDVGL RTTTG RV
Sbjct: 98 CTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRV 156
Query: 488 FGAIKGVL 511
FGA+KG L
Sbjct: 157 FGALKGAL 164
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +1
Query: 13 GFVKVVXNKQYFKRYQVKFKRRREGKTDYYARKRL 117
GFVK YFKR+QVKFKRRR+GKTDY AR RL
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRL 37
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 137 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHXL 259
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 198 WHVTSLLERRTIRRYLGVLY 139
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>03_02_0948 -
12645972-12646010,12646612-12646750,12646846-12647090,
12647184-12647505,12647781-12648005,12648185-12648351,
12648428-12648544,12648989-12649162,12649372-12649467,
12649624-12649840,12650267-12650385,12650478-12650670,
12651212-12651363,12651485-12651611,12651731-12651828
Length = 809
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 198 WHVTSLLERRTIRRYLGVLYL 136
W S LERR RRYL + Y+
Sbjct: 771 WKYVSKLERRETRRYLEMFYI 791
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 268 WCEGWSDKLCCXIFNWSAISTKTASK 345
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,727
Number of Sequences: 37544
Number of extensions: 231627
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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