Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F24
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   140   6e-34
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  140 bits (339), Expect = 6e-34
 Identities = 70/130 (53%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
 Frame = +2

Query: 122 VXDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHXLPRYGVKVGLTNYAA 301
           V DKNKYNTPKYRLIVR++NKDV  Q+AYS+IEGD +V +AYSH LPRYG+KVGLTNYAA
Sbjct: 38  VQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAA 97

Query: 302 XYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPV-DNGPXAFRCYLDVGLXRTTTG 478
            Y+TG                          +YNVE   D  P  F+  LD+GL RTTTG
Sbjct: 98  AYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTG 155

Query: 479 ARVFGAIKGV 508
           +++F  +KGV
Sbjct: 156 SKIFAVMKGV 165



 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/36 (83%), Positives = 32/36 (88%)
 Frame = +1

Query: 10  MGFVKVVXNKQYFKRYQVKFKRRREGKTDYYARKRL 117
           MG VKV+ NK YFKRYQVK +RRREGKTDYYARKRL
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRL 36


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 245  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 132
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 245  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 132
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 287 SDQPSHHNVAXHVNKQRTQYGHLQSESRP 201
           SD P HH    H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 287 SDQPSHHNVAXHVNKQRTQYGHLQSESRP 201
           SD P HH    H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 287 SDQPSHHNVAXHVNKQRTQYGHLQSESRP 201
           SD P HH    H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 131 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 223
           K+K  TP YRL++ L + D+T  V  S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,611
Number of Sequences: 27780
Number of extensions: 211063
Number of successful extensions: 451
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)