Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_F20
(653 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 29 0.039
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 29 0.039
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 25 0.48
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 24 1.1
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 24 1.1
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 24 1.1
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 24 1.1
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 24 1.1
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 24 1.1
DQ435332-1|ABD92647.1| 135|Apis mellifera OBP15 protein. 23 1.9
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 4.5
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 7.9
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 29.1 bits (62), Expect = 0.039
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 23 KQRKKYFVSIVCFSRFLLGDECFFYQICRLCYVFILIKCYVI 148
++RK+ F++IVCF +L+G C YVF L+ Y +
Sbjct: 412 RKRKELFIAIVCFVSYLIGLFCITE---GGMYVFQLLDSYAV 450
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 29.1 bits (62), Expect = 0.039
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 23 KQRKKYFVSIVCFSRFLLGDECFFYQICRLCYVFILIKCYVI 148
++RK+ F++IVCF +L+G C YVF L+ Y +
Sbjct: 465 RKRKELFIAIVCFVSYLIGLFCITE---GGMYVFQLLDSYAV 503
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 25.4 bits (53), Expect = 0.48
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 509 LYXTHI-TCCVKLASLIQHWISLKADPNRI 423
L+ T+I TC + + S + WI +A P R+
Sbjct: 248 LFHTYIPTCLIVIMSWVSFWIKPEAAPARV 277
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 336 KXRRYKFIKSHRQKFVK*NTKIRKRY 413
K RRY+ + + ++KF++ T RKRY
Sbjct: 15 KDRRYEKLHNEKEKFLEERTS-RKRY 39
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 336 KXRRYKFIKSHRQKFVK*NTKIRKRY 413
K RRY+ + + ++KF++ T RKRY
Sbjct: 15 KDRRYEKLHNEKEKFLEERTS-RKRY 39
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 336 KXRRYKFIKSHRQKFVK*NTKIRKRY 413
K RRY+ + + ++KF++ T RKRY
Sbjct: 15 KDRRYEKLHNEKEKFLEERTS-RKRY 39
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 336 KXRRYKFIKSHRQKFVK*NTKIRKRY 413
K RRY+ + + ++KF++ T RKRY
Sbjct: 15 KDRRYEKLHNEKEKFLEERTS-RKRY 39
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 336 KXRRYKFIKSHRQKFVK*NTKIRKRY 413
K RRY+ + + ++KF++ T RKRY
Sbjct: 15 KDRRYEKLHNEKEKFLEERTS-RKRY 39
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 336 KXRRYKFIKSHRQKFVK*NTKIRKRY 413
K RRY+ + + ++KF++ T RKRY
Sbjct: 15 KDRRYEKLHNEKEKFLEERTS-RKRY 39
>DQ435332-1|ABD92647.1| 135|Apis mellifera OBP15 protein.
Length = 135
Score = 23.4 bits (48), Expect = 1.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 409 DINVQIRFGSALSDIQCCMRDANFTQHV 492
D NVQ+ A+ +D NF +HV
Sbjct: 56 DENVQLYIECAMKKFSFVDKDGNFNEHV 83
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 22.2 bits (45), Expect = 4.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 510 FILYTYNMLCKVSISH 463
F YTY+ +C+++I H
Sbjct: 498 FDTYTYDTICQLNIVH 513
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 482 VKLASLIQHWISLKADPNRICTLIS 408
V + S W+ L A P R+ L++
Sbjct: 213 VVMLSWFSFWLGLDAIPGRVALLVT 237
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,030
Number of Sequences: 438
Number of extensions: 3251
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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