Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F16
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   3.6  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    26   4.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.3  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   8.3  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   8.3  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   8.3  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 68  DAALTSYRLLVSTTFGLLVFNDTQLISTVSIK*YGPLFYLAGNVRGWVL 214
           D  L +Y+   + +     +   +  S + +K +GP +YL+  + GW L
Sbjct: 73  DLKLQAYQYSAAVSVFYATYITAETPSVLLVKKFGPHYYLSAMIIGWSL 121


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 126 NTSKPNVVETNNRYEVSAASP 64
           N S PN  ETN+R E   A+P
Sbjct: 494 NASSPNPSETNSRAETPTAAP 514


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 99  SLLHLAYSYLTIPN*YQLYLSSNMDLYFIWLVTFVAGFWIFKKIXEWQNLPP 254
           SLL+L +   +IP+   L   +++  YF+ +    +   I       QNLPP
Sbjct: 140 SLLYLFFQAESIPSLLLLIFFASLKFYFVLITLSYSNKLIVDSGIRPQNLPP 191


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 117  YSYLTIPN*YQLYLSSNMDLYFIWLVT 197
            +S L+I N  +LYL+ N +   +W++T
Sbjct: 1457 FSILSITNSQRLYLAKNTEETEVWMLT 1483


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 486 GIICAEGGLWRDQXKLITSWLKSFGMSKHSVS 581
           GII +   + +D  + ++ WL++  +  HSVS
Sbjct: 9   GIIASTPPISKDSRRNVSHWLQALAVFLHSVS 40


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 180 FIWLVTFVAGFWIFKKIXEWQNLPPGPWGLPIVGYLPFIDRYHPHITLTNL 332
           F+WL     GFW+ + I   + LP   +  P++G LPF   Y   + LT L
Sbjct: 105 FVWLEVAWGGFWVSRVIA--RLLPYILY--PLMGILPF-TMYKYTVILTAL 150


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 485 WNYLCRRRFVEGPXEINNIV 544
           WNYLC      GP +++N++
Sbjct: 221 WNYLCGVLDKSGPSKLDNLI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,634
Number of Sequences: 5004
Number of extensions: 58829
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)