Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F16
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    29   0.045
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 0.045
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
 Frame = +3

Query: 252 PGPWGLPIVGYLPFIDRY-HPHITLTNLSK---TYGAIYGLKMGSIYAVVLSDHKLVRDA 419
           PGP  LP++G    +D +  P    + + K    +  +  + +G    + L D + V   
Sbjct: 45  PGPPALPLIGNA--LDLFGSPDAMFSQVLKKAENFKDVVKIWVGPKLVICLIDPRDVEII 102

Query: 420 FSKDSFSGRAPLYLTHGLMNGNGIICAEGGLWRDQXKLI 536
            S + +  ++  Y       G+G++ + G  WR+  KLI
Sbjct: 103 LSSNVYIDKSTEYRFFKPWLGDGLLISTGQKWRNHRKLI 141


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 416 ISYKFMIR*HYSIYAAHFETV 354
           +SY  ++R HYS+ +  + T+
Sbjct: 233 LSYNILLRRHYSMNSTTYVTL 253



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 425 KRQFFWTSTSLLNTW 469
           K+Q+ W  TS+L  W
Sbjct: 385 KKQYTWRHTSVLIGW 399


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 263 PRSGGQILPFXYFFENPKP 207
           P+SG     F  F +NP+P
Sbjct: 176 PKSGKGFSLFARFLKNPRP 194


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 473 YEWKWNYLCR 502
           +EWKWN + +
Sbjct: 37  FEWKWNDIAK 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,941
Number of Sequences: 438
Number of extensions: 4394
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)