Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_F15
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 113 1e-26
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 109 2e-25
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 108 6e-25
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 40 3e-04
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 40 3e-04
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 37 0.002
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 31 0.10
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.23
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 29 0.54
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.54
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 0.71
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 1.6
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 3.8
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 5.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.8
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 113 bits (273), Expect = 1e-26
Identities = 54/112 (48%), Positives = 77/112 (68%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 261
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA++ +++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 262 KLSSMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
KL+++P GG E+ K KE ESD+DMGFGLFD
Sbjct: 61 KLATVPTGGAASAAPAAAAGGAAPAAEEA--AKEEAKEEEESDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 109 bits (262), Expect = 2e-25
Identities = 52/112 (46%), Positives = 77/112 (68%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 261
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE+++ +++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 262 KLSSMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
KL+++P GG E+ K KE ESD+DMGFGLFD
Sbjct: 61 KLATVPSGGAAAAAAPAAAGGAAPAAEEA--AKEEAKEEEESDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 108 bits (259), Expect = 6e-25
Identities = 53/112 (47%), Positives = 76/112 (67%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 261
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+A +++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 262 KLSSMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
KLS++P G + K+ E ESD+DMGFGLFD
Sbjct: 61 KLSTVPSAGAVATPAAGGAAGAEATSAAEEAKEEEAAE--ESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 39.5 bits (88), Expect = 3e-04
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +1
Query: 97 AYLLAVLGGKTTPAAADVEKILSSVG-IEADAXKLKKVITELNGKDVEQLIA-AGREKLS 270
+Y +L + +D L+ G +E + L GKD+++L+ G +
Sbjct: 9 SYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAA 68
Query: 271 SMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
S P G E + +KK KE ESD+DMGFGLFD
Sbjct: 69 SAPTAAGAGAAAPA--------EAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 39.5 bits (88), Expect = 3e-04
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = +1
Query: 217 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDD 396
L GKD+++L+ + PV GG E ++K KE ESD+D
Sbjct: 50 LEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADG-------EAPAEEKEEAKEEEESDED 102
Query: 397 MGFGLFD 417
MGFGLFD
Sbjct: 103 MGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 36.7 bits (81), Expect = 0.002
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +1
Query: 217 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDD 396
L GKD+++L+ ++ P GG E+K+ KE ESD+D
Sbjct: 50 LEGKDLKELLL-NIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEE-----AKEEEESDED 103
Query: 397 MGFGLFD 417
MGFGLFD
Sbjct: 104 MGFGLFD 110
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 31.1 bits (67), Expect = 0.10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 370 KEXSESDDDMGFGLFD 417
+E ESD+DMGFGLFD
Sbjct: 297 EEEEESDEDMGFGLFD 312
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.9 bits (64), Expect = 0.23
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -3
Query: 218 SSVITFLSXSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 90
SSV T LS SAS+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = -3
Query: 266 SFSRPAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTASKYA 96
SF+ PA+ S TSL SS S SAS + + + S+S+A+ P S++S +A
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 28.7 bits (61), Expect = 0.54
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -3
Query: 266 SFSRPAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTA 108
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.54
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = -3
Query: 287 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVV 126
PPTG S S P + STS+P+ T + + S +PT STS
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTT----STSCTTSTS 177
Query: 125 LPPSTASKYAAT 90
+PP+ S +T
Sbjct: 178 IPPTGGSSSLST 189
Score = 25.4 bits (53), Expect = 5.0
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = -3
Query: 287 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVV 126
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 125 LPPSTAS 105
+P +S
Sbjct: 235 IPTGGSS 241
Score = 25.4 bits (53), Expect = 5.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 254 PAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 90
P + STS+P+ T + + S+ +PT STS +PP+ S T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 28.3 bits (60), Expect = 0.71
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 233 TSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTASKY 99
+ L + S T +S S+ S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 248 AISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTAS 105
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.8
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 77 KKCVTWPRIYWLCWV 121
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 260 SRPAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTAS 105
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 416 TKLYKSTRRWSLFQFMF 466
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 284 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSXSASASIPTELRIFSTSAAAGVVLPPS 114
PT S+ +++ S+S P SS +T S S S+ T STS++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 113 TASKYAAT 90
TAS +++
Sbjct: 262 TASSSSSS 269
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 233 TSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 90
T PL S + +SAS T +++ +V PPST+ T
Sbjct: 35 TPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,689
Number of Sequences: 5004
Number of extensions: 22098
Number of successful extensions: 99
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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