Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_F15
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 108 2e-24
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 97 6e-21
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 95 4e-20
07_01_1001 - 8460467-8460799 74 8e-14
07_03_0321 + 16757414-16757743 71 4e-13
01_06_0098 - 26416768-26416998 32 0.31
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 31 0.54
06_03_1287 - 29011710-29011871,29012209-29012272,29012556-290126... 29 2.2
06_03_0854 + 25400855-25403741,25406174-25407708 29 2.2
12_01_0090 + 717524-719080 29 2.9
11_06_0264 - 21785450-21786928 28 3.8
08_02_1093 - 24271826-24273427 28 3.8
05_02_0121 - 6834843-6835127 27 8.8
03_02_0539 - 9329572-9330729,9330988-9331041 27 8.8
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 108 bits (260), Expect = 2e-24
Identities = 57/115 (49%), Positives = 77/115 (66%), Gaps = 3/115 (2%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 261
M+ +AAYLLAVLGG T+P+A D++ IL SVG+EA+ +L+ +++EL GKD+ ++IAAGRE
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 262 KLSSMPVGGG---XXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
K +S+P GGG EE K ++K KE ESDDDMGF LFD
Sbjct: 61 KFASVPSGGGGGIAVAAPTAAGGGAAPAEEAKKEEKVEEKE--ESDDDMGFSLFD 113
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 97.5 bits (232), Expect = 6e-21
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Frame = +1
Query: 79 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGR 258
+M++++AYLLA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 259 EKLSSMPV-GGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
EK +S+P GGG + + K+ +E ESDDDMGF LFD
Sbjct: 253 EKFASVPCGGGGVAVAAAAPAAGGGAAPQSEAKKEEKVEEKEESDDDMGFSLFD 306
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 94.7 bits (225), Expect = 4e-20
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 261
M++++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GRE
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 262 KLSSMPVGGG-----XXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
K +S+P GGG E KK DK +E ESDDDMGF LFD
Sbjct: 61 KFASVPSGGGGVAVAAAAPAAGGAGGAPAAEAKKEDK---VEEKEESDDDMGFSLFD 114
>07_01_1001 - 8460467-8460799
Length = 110
Score = 73.7 bits (173), Expect = 8e-14
Identities = 40/112 (35%), Positives = 60/112 (53%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 261
MR+VAAYL+A +GG +P DV IL +VG + D KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 262 KLSSMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
L+ VG E++K ++K E +DD+ F LFD
Sbjct: 61 MLAFGGVGAAPAAAATAGGGAAAAGEKEKEEEKV----EEEEEDDIVFSLFD 108
>07_03_0321 + 16757414-16757743
Length = 109
Score = 71.3 bits (167), Expect = 4e-13
Identities = 41/112 (36%), Positives = 60/112 (53%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGRE 261
MR+VAAYL+A +GG +P DV IL +VG + D KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 262 KLSSMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDDMGFGLFD 417
L+ G EK+ ++K KE E +DD+ F LFD
Sbjct: 61 MLAF----GAAPAAAAATAGGAAAAGEKEEEEKVEEKE-KEGEDDIVFSLFD 107
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 133 PAAADVEKILSSVGIEADAXKLKKVITELNGKD 231
P V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 31.1 bits (67), Expect = 0.54
Identities = 22/67 (32%), Positives = 27/67 (40%)
Frame = +1
Query: 217 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEKKXDKKXXXKEXSESDDD 396
L + V+ LI + + PV EEKK + K ESDDD
Sbjct: 50 LEHRSVDDLILSVGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAK------EESDDD 103
Query: 397 MGFGLFD 417
MGF LFD
Sbjct: 104 MGFSLFD 110
>06_03_1287 -
29011710-29011871,29012209-29012272,29012556-29012611,
29012787-29012984
Length = 159
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 343 KKXDKKXXXKEXSESDDDMGFGLFD 417
K +KK KE ES+DD+GF LFD
Sbjct: 137 KAEEKKEEEKE--ESEDDLGFSLFD 159
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 290 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPP 117
PPP I + A +S P+S+V + L+ SASA+ F+ + A +PP
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA-----AAFAPAPVAAEAIPP 1172
>12_01_0090 + 717524-719080
Length = 518
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 287 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSXSASASIPTELRIF 153
PP + S P ++ S+S SS + + ++S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>11_06_0264 - 21785450-21786928
Length = 492
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 290 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSXSASASIPTE 165
PPP + + S AIS + V FL S++A IPTE
Sbjct: 384 PPPPPLATAASTATAISVAGLGGCGDVALFLGKSSAACIPTE 425
>08_02_1093 - 24271826-24273427
Length = 533
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 79 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGR 258
+ R AA +AV G+TT AAA + SS G ++ + L +D +A R
Sbjct: 3 RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARDAVASMALSR 62
>05_02_0121 - 6834843-6835127
Length = 94
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 175 IEADAXKLKKVITELNGKDVEQLIAAGREK 264
+EADA + K V+ L GKD A+ E+
Sbjct: 17 VEADAAEFKSVVQSLTGKDSTAATASPEEE 46
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 266 SFSRPAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTS-AAAGVVLPPSTAS 105
S + A S S+S P SS L ++ +P+ AAAG ++PPS S
Sbjct: 150 SSAAAAGASSSSSKPSSSAARQLPGGGASPMPSAAASTQPGGAAAGAIIPPSGLS 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,309,077
Number of Sequences: 37544
Number of extensions: 159410
Number of successful extensions: 493
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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