Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F10
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    97   4e-21
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.31 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   0.31 
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    30   0.40 
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   2.8  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    27   2.8  
Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    27   5.0  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    26   8.7  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 38/56 (67%), Positives = 46/56 (82%)
 Frame = +1

Query: 97  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 264
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CF E A DI FKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 157 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 258
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 157 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 258
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 180 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 31
           M   A S  PR+  +  +    N     + +LNC S+T ++ ++P+ WRT
Sbjct: 93  MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRT 141


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 102 AHFKKLNCFSLTSNKLDTPSRWRT 31
           A F +LNC ++T+N+   P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 144 RISVMPILLQQAWLNPQVRFEHMQTVLXRVCS*H 245
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 180 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 31
           M   A S  PR+  +  +    +     + +LNC S+T ++ ++P+ WRT
Sbjct: 93  MKTAAASTCPRTCGLCCQTDAYSCPNVAYPRLNCASITLSQCNSPA-WRT 141


>Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical
           protein F35E8.9 protein.
          Length = 248

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 180 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 31
           M   A S  PR+  +  +    +     + +LNC S+T+++  +P+ WRT
Sbjct: 93  MKTAAQSTCPRTCGLCCQTSAYSCPNVAYPRLNCASITASQCISPA-WRT 141


>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 91  LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 198
           LK   A  W+ +P+R G  +R  C SC     ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 199 RTCGLSHACWSRIGMTEILVRICEGEN 119
           R C ++H C+S +   E +   CEGEN
Sbjct: 40  RVCPVAH-CYSSLTAPEPMTSTCEGEN 65


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 156 MPILLQQAWLNPQVRFEHMQTVLXRVCS*HXIQE 257
           M I + + WL+P ++F+H+      +   H + E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 156 MPILLQQAWLNPQVRFEHMQTVL 224
           + +L  Q W +P++RF+H+   L
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCL 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,272,807
Number of Sequences: 27780
Number of extensions: 117641
Number of successful extensions: 313
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)