Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F07
         (379 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P63173 Cluster: 60S ribosomal protein L38; n=33; Eukary...    37   0.11 
UniRef50_UPI0000F201A6 Cluster: PREDICTED: similar to 60S riboso...    36   0.19 
UniRef50_Q962S5 Cluster: Ribosomal protein L38; n=14; Eukaryota|...    35   0.58 
UniRef50_O17570 Cluster: 60S ribosomal protein L38; n=24; Eukary...    33   1.3  
UniRef50_O22860 Cluster: 60S ribosomal protein L38; n=2; core eu...    33   2.3  
UniRef50_Q0V9Y6 Cluster: LOC548667 protein; n=5; Xenopus|Rep: LO...    31   7.1  
UniRef50_UPI00005A5C29 Cluster: PREDICTED: similar to Cohesin su...    31   9.4  

>UniRef50_P63173 Cluster: 60S ribosomal protein L38; n=33;
           Eukaryota|Rep: 60S ribosomal protein L38 - Homo sapiens
           (Human)
          Length = 70

 Score = 37.1 bits (82), Expect = 0.11
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKN 141
           K F LTARRKDAKSVKIKKN
Sbjct: 9   KDFLLTARRKDAKSVKIKKN 28


>UniRef50_UPI0000F201A6 Cluster: PREDICTED: similar to 60S ribosomal
           protein L38; n=1; Danio rerio|Rep: PREDICTED: similar to
           60S ribosomal protein L38 - Danio rerio
          Length = 154

 Score = 36.3 bits (80), Expect = 0.19
 Identities = 20/31 (64%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +1

Query: 55  HAALKSKIS--KTF*LTARRKDAKSVKIKKN 141
           H  L  +I   K F LTA+RKDAKSVKIKKN
Sbjct: 14  HGRLPREIEEIKDFLLTAKRKDAKSVKIKKN 44


>UniRef50_Q962S5 Cluster: Ribosomal protein L38; n=14;
           Eukaryota|Rep: Ribosomal protein L38 - Spodoptera
           frugiperda (Fall armyworm)
          Length = 70

 Score = 34.7 bits (76), Expect = 0.58
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKN 141
           K F L ARRKDAKSVKIKKN
Sbjct: 9   KDFLLKARRKDAKSVKIKKN 28



 Score = 33.5 bits (73), Expect = 1.3
 Identities = 22/44 (50%), Positives = 27/44 (61%)
 Frame = +2

Query: 128 K*RRTLQNVKFKGSMLKVPGTPWVITDKAEG*GNLRQSLPPGLQ 259
           K ++  QNVKFK    +   T  VITDK +    L+QSLPPGLQ
Sbjct: 24  KIKKNQQNVKFKVRCSRFLYT-LVITDKEKA-EKLKQSLPPGLQ 65


>UniRef50_O17570 Cluster: 60S ribosomal protein L38; n=24;
           Eukaryota|Rep: 60S ribosomal protein L38 -
           Caenorhabditis elegans
          Length = 70

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKN 141
           K F + ARRKDAKSVKIKKN
Sbjct: 9   KDFLVKARRKDAKSVKIKKN 28


>UniRef50_O22860 Cluster: 60S ribosomal protein L38; n=2; core
           eudicotyledons|Rep: 60S ribosomal protein L38 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 69

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKN 141
           K F LTARRKDA+SVKIK++
Sbjct: 9   KDFLLTARRKDARSVKIKRS 28


>UniRef50_Q0V9Y6 Cluster: LOC548667 protein; n=5; Xenopus|Rep:
           LOC548667 protein - Xenopus tropicalis (Western clawed
           frog) (Silurana tropicalis)
          Length = 419

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = +2

Query: 74  RYQRLFN*RRGGKTPNRSK*RRTLQNVKFKGSMLKVPGTPWVITDKAEG*GNLRQSLPPG 253
           RY  +F  R+  K+    K ++   NVKFK    K   T  VITDK +    L+QSLPPG
Sbjct: 360 RYYHIF--RKDAKSV---KIKKNKDNVKFKVRCSKYLYT-LVITDKEKA-EKLKQSLPPG 412

Query: 254 L 256
           L
Sbjct: 413 L 413


>UniRef50_UPI00005A5C29 Cluster: PREDICTED: similar to Cohesin
           subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2); n=1;
           Canis lupus familiaris|Rep: PREDICTED: similar to
           Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog
           2) - Canis familiaris
          Length = 530

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 255 RP-GGKLCLKFPQPSALSVMTQ-GVPGTLSIEPLNLTFCRVLLYFDRFGVFP 106
           RP GG+ C + P  + L+  +Q G PGTL +   +L      LY+ +F  +P
Sbjct: 294 RPLGGRRCSERPCCTGLARRSQSGAPGTLHVTAASLFLQETGLYYKKFLAYP 345


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,271,101
Number of Sequences: 1657284
Number of extensions: 4005675
Number of successful extensions: 9361
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9360
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)