Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F07
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    27   1.3  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   9.1  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.1  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKN 141
           K F   ARRKDA S +IKKN
Sbjct: 9   KQFLEIARRKDATSARIKKN 28


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 143 GFFFILTDLASFLL 102
           GFFFIL  L SFL+
Sbjct: 19  GFFFILFPLVSFLM 32


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 92  N*RRGGKTPNRSK*RRTLQNVKFKGSMLK 178
           N +RGG TPN       L N  F  S  K
Sbjct: 195 NYKRGGYTPNTQYFEEPLNNTSFPNSQGK 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,032,737
Number of Sequences: 5004
Number of extensions: 16365
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)