Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F07
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     31   0.23 
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     31   0.30 
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    31   0.30 
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945...    28   2.1  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    27   4.9  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    27   4.9  
02_04_0610 + 24335153-24337724,24337835-24338256                       27   4.9  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKN 141
           K F LTARRKDA+SV+IK++
Sbjct: 9   KDFLLTARRKDARSVRIKRS 28


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKK 138
           K F LTARRKDA+SV+IK+
Sbjct: 9   KDFLLTARRKDARSVRIKR 27



 Score = 26.2 bits (55), Expect = 8.6
 Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 134 RRTLQNVKFKGSMLKVPGTPWVI-TDKAEG*GNLRQSLPPGL 256
           +RT   VKFK    K   T  V   DKA     L+QSLPPGL
Sbjct: 26  KRTKDAVKFKVRCSKYLYTLCVFDADKAN---KLKQSLPPGL 64


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKK 138
           K F LTARRKDA+SV+IK+
Sbjct: 39  KDFLLTARRKDARSVRIKR 57



 Score = 26.2 bits (55), Expect = 8.6
 Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 134 RRTLQNVKFKGSMLKVPGTPWVI-TDKAEG*GNLRQSLPPGL 256
           +RT   VKFK    K   T  V   DKA     L+QSLPPGL
Sbjct: 56  KRTKDAVKFKVRCSKYLYTLCVFDADKAN---KLKQSLPPGL 94


>01_05_0033 +
           17390571-17390894,17394152-17394199,17394479-17394526,
           17395224-17395400,17395492-17395642,17395742-17395828,
           17397236-17397360,17397608-17397726,17399983-17400082,
           17400188-17400223
          Length = 404

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 222 QPSALSVMTQGVPGTLSIEPLNLTFCRVLL 133
           + S  S+MT+ VPG  S   L   FC +LL
Sbjct: 168 EESFRSIMTEPVPGVYSFAMLQPNFCEMLL 197


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 36  ENYSSSTCRAEIKDIKDFLINGEEERRQIGQNKEE 140
           E+ SS+  +A  ++ K  LING+E+++Q  + +EE
Sbjct: 22  EDDSSNLLQARGRNKKHALINGDEQQQQQEEEEEE 56


>02_05_0717 +
           31190626-31191234,31191954-31192394,31192699-31192802,
           31193000-31194384,31194508-31194548,31195065-31195133,
           31195335-31195435,31195747-31195825,31195939-31196037,
           31196119-31196187,31197609-31197658,31197749-31197925,
           31198045-31198152,31198224-31198290
          Length = 1132

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 60  RAEIKDIKDFLINGEEERRQIGQNKEE 140
           R ++KDI +++IN  +E  Q+ Q   E
Sbjct: 544 RMKVKDISEYMINAAKENPQLAQKIHE 570


>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 216 SALSVMTQGVPGTLSIEPLNLTFCRVL 136
           +AL++  QG+ GT+S    NLTF R L
Sbjct: 71  TALNLAGQGLSGTISSSVGNLTFVRTL 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,703,719
Number of Sequences: 37544
Number of extensions: 107377
Number of successful extensions: 246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)