Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F07
         (379 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   3.7  
AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.            22   8.6  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +3

Query: 24  TVLVENYSSSTCRAEIKDIKDFLINGEEERRQIGQNKEE 140
           T++    + + C A++KD++  + +G+  R +  ++ EE
Sbjct: 756 TIVEARETQTQCSAKVKDLQAKIADGKGHRERELKSAEE 794


>AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.
          Length = 438

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 202 DDPGCTRNLEHRTLELDILQGSSLF*PIWR 113
           D    + N+ HR ++L  ++    F  +WR
Sbjct: 107 DISNSSTNISHRPIDLKDIKARGRFGVVWR 136


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,266
Number of Sequences: 2352
Number of extensions: 4659
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 28646721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)