Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F07
         (379 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.      37   0.019
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...    37   0.019
AB058767-1|BAB47493.1|  660|Homo sapiens KIAA1864 protein protein.     29   6.6  

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKN 141
           K F LTARRKDAKSVKIKKN
Sbjct: 9   KDFLLTARRKDAKSVKIKKN 28



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +2

Query: 128 K*RRTLQNVKFKGSMLKVPGTPWVITDKAEG*GNLRQSLPPGL 256
           K ++   NVKFK    +   T  VITDK +    L+QSLPPGL
Sbjct: 24  KIKKNKDNVKFKVRCSRYLYT-LVITDKEKA-EKLKQSLPPGL 64


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKN 141
           K F LTARRKDAKSVKIKKN
Sbjct: 9   KDFLLTARRKDAKSVKIKKN 28



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +2

Query: 128 K*RRTLQNVKFKGSMLKVPGTPWVITDKAEG*GNLRQSLPPGL 256
           K ++   NVKFK    +   T  VITDK +    L+QSLPPGL
Sbjct: 24  KIKKNKDNVKFKVRCSRYLYT-LVITDKEKA-EKLKQSLPPGL 64


>AB058767-1|BAB47493.1|  660|Homo sapiens KIAA1864 protein protein.
          Length = 660

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 225 PQPSALSVMTQGVPGTLSIEPLNLTFCRVLLY 130
           P+P+   +  QG+   L +EP  L F R+LL+
Sbjct: 495 PEPAIFQLSCQGIRPELELEPRQLHFDRLLLH 526


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,133,712
Number of Sequences: 237096
Number of extensions: 637485
Number of successful extensions: 1426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)