Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F07
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   8.4  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 311 IFFICFNPSYI 279
           +FFIC+ P Y+
Sbjct: 268 VFFICWTPYYV 278



 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 147 CRVLLYFDRFGVF 109
           CR++ +F  FG++
Sbjct: 111 CRIMAFFRMFGLY 123


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 214 CFVSDDPGCTRNLEHR 167
           CF  DD  C   L+H+
Sbjct: 447 CFAQDDGLCPYTLKHK 462


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 214 CFVSDDPGCTRNLEHRTLELDIL 146
           C V+  PG + N E + L  D+L
Sbjct: 7   CLVAPFPGASANSEAKRLYDDLL 29


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 187 YTLGHH*QS 213
           YTLGHH Q+
Sbjct: 169 YTLGHHHQN 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,248
Number of Sequences: 438
Number of extensions: 935
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)