Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F06
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   121   4e-28
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   117   6e-27
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   2.8  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   2.8  

>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  121 bits (292), Expect = 4e-28
 Identities = 56/85 (65%), Positives = 66/85 (77%)
 Frame = +1

Query: 259 QSSLAQHRARWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 438
           +S  +  + RWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A   RRRTYRA
Sbjct: 86  KSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRA 145

Query: 439 HGRINPYMSSPCHIEVCLXEREXAV 513
           HGRINPYMSSPCH+E+ L E+E AV
Sbjct: 146 HGRINPYMSSPCHVELILSEKEEAV 170



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
 Frame = +3

Query: 72  LRNHAKRVVQTSAVHF-KNTYXTAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGR 248
           LR H K +V    V    NT  TA A+RK+PL +A RYL++VI  K+ IPFRR+ GGVGR
Sbjct: 22  LRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGR 81

Query: 249 CAQAK 263
            AQ K
Sbjct: 82  TAQVK 86



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +2

Query: 41  MGRYSREPDNPAKSCKARGSNLR 109
           MG+YS EP NP KS KA G +LR
Sbjct: 1   MGKYSTEPSNPTKSAKAMGRDLR 23


>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  117 bits (282), Expect = 6e-27
 Identities = 54/78 (69%), Positives = 62/78 (79%)
 Frame = +1

Query: 280 RARWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 459
           + RWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A   RRRTYRAHGRINPY
Sbjct: 81  QGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPY 140

Query: 460 MSSPCHIEVCLXEREXAV 513
           MSSPCHIE+ L E+E  V
Sbjct: 141 MSSPCHIELILSEKEEPV 158



 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 35/51 (68%), Positives = 41/51 (80%)
 Frame = +3

Query: 111 VHFKNTYXTAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 263
           VHFKNT  TA AIRK+PL +A RYL++VI  K+ IPFRR+ GGVGR AQAK
Sbjct: 24  VHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAK 74



 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 41  MGRYSREPDNPAKSCKARGSNLR 109
           M +YSRE +NP KS KA G +LR
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLR 23


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 358  FCCQRLIQRSSITARGIRRISWASEPCVVPNCFA*AQRPTPP 233
            F C RL  +S+   RG+  I WA+   V P   A   +P  P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 295  KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 420
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,433
Number of Sequences: 37544
Number of extensions: 305705
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)