Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F06
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   124   5e-29
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   105   2e-23
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   7.5  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  124 bits (299), Expect = 5e-29
 Identities = 58/79 (73%), Positives = 65/79 (82%)
 Frame = +1

Query: 280 RARWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 459
           + RWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPY
Sbjct: 82  QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPY 141

Query: 460 MSSPCHIEVCLXEREXAVA 516
           MSSPCHIEV L E+E  V+
Sbjct: 142 MSSPCHIEVILAEKEDVVS 160



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +3

Query: 111 VHFKNTYXTAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQG 284
           VHFKNT+  AMA+R MPLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQG
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQG 83



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 50  YSREPDNPAKSCKARGSNLR 109
           YSR P+N  KSCKARGS+LR
Sbjct: 6   YSRAPENSTKSCKARGSDLR 25


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  105 bits (252), Expect = 2e-23
 Identities = 50/67 (74%), Positives = 55/67 (82%)
 Frame = +1

Query: 316 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLX 495
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L 
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 496 EREXAVA 516
           E+E  V+
Sbjct: 126 EKEDVVS 132



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 26/40 (65%), Positives = 31/40 (77%)
 Frame = +3

Query: 111 VHFKNTYXTAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 230
           VHFKNT+  AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 50  YSREPDNPAKSCKARGSNLR 109
           YSR P+N  KSCKARGS+LR
Sbjct: 6   YSRAPENSTKSCKARGSDLR 25


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 478 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACPRPKFCC 350
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +1

Query: 289 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 450
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 451 NPYMSSPCHIE 483
           NP+  SPC ++
Sbjct: 548 NPH--SPCMVD 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,474,230
Number of Sequences: 27780
Number of extensions: 248695
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)