Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_F05
(354 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VH69 Cluster: 40S ribosomal protein S29; n=31; Eukary... 117 5e-26
UniRef50_P62273 Cluster: 40S ribosomal protein S29; n=66; Eukary... 106 1e-22
UniRef50_P90983 Cluster: Ribosomal protein, small subunit protei... 100 1e-20
UniRef50_UPI0000E202DC Cluster: PREDICTED: similar to ribosomal ... 96 1e-19
UniRef50_Q680P8 Cluster: 40S ribosomal protein S29; n=4; Eukaryo... 93 2e-18
UniRef50_A1DNZ6 Cluster: 40S ribosomal protein S29, putative; n=... 89 2e-17
UniRef50_O74329 Cluster: 40S ribosomal protein S29; n=12; cellul... 86 1e-16
UniRef50_Q6CFB0 Cluster: Similar to sp|P41057 Saccharomyces cere... 84 6e-16
UniRef50_Q1DQB3 Cluster: Predicted protein; n=4; Pezizomycotina|... 82 3e-15
UniRef50_Q8INN0 Cluster: CG8495-PC, isoform C; n=1; Drosophila m... 77 9e-14
UniRef50_P54110 Cluster: 30S ribosomal protein S14P; n=7; Methan... 68 4e-11
UniRef50_Q4Q817 Cluster: Ribosomal protein s29, putative; n=5; T... 67 9e-11
UniRef50_UPI0001554864 Cluster: PREDICTED: similar to ribosomal ... 65 3e-10
UniRef50_Q22MB0 Cluster: Putative uncharacterized protein; n=1; ... 65 4e-10
UniRef50_O28368 Cluster: 30S ribosomal protein S14P; n=2; cellul... 62 2e-09
UniRef50_O05635 Cluster: 30S ribosomal protein S14P; n=11; Therm... 59 2e-08
UniRef50_Q74NE6 Cluster: 30S ribosomal protein S14P; n=2; Archae... 59 2e-08
UniRef50_Q013Q2 Cluster: RS29_CULQU 40S ribosomal protein S29; n... 58 6e-08
UniRef50_Q8SS73 Cluster: 40S ribosomal protein S29; n=1; Encepha... 58 6e-08
UniRef50_Q97BW2 Cluster: 30S ribosomal protein S14P; n=12; Archa... 52 3e-06
UniRef50_P62012 Cluster: 30S ribosomal protein S14P; n=10; Archa... 52 4e-06
UniRef50_Q7R0P0 Cluster: GLP_79_44835_45248; n=1; Giardia lambli... 50 9e-06
UniRef50_Q9HPC0 Cluster: 30S ribosomal protein S14P; n=8; Euryar... 48 5e-05
UniRef50_A2ZKX8 Cluster: Putative uncharacterized protein; n=3; ... 45 3e-04
UniRef50_P26816 Cluster: 30S ribosomal protein S14P; n=3; Haloba... 45 3e-04
UniRef50_UPI000023DF20 Cluster: hypothetical protein FG07181.1; ... 39 0.028
UniRef50_Q8XHT6 Cluster: 30S ribosomal protein S14 type Z; n=83;... 37 0.11
UniRef50_P95911 Cluster: Orf c01013 protein; n=1; Sulfolobus sol... 33 1.4
UniRef50_Q9GTH4 Cluster: Nuclear receptor NHR-43; n=3; Caenorhab... 31 4.3
UniRef50_UPI0000F32986 Cluster: UPI0000F32986 related cluster; n... 31 5.7
UniRef50_UPI0000F211F6 Cluster: PREDICTED: hypothetical protein;... 31 7.5
UniRef50_Q9LHI5 Cluster: Gb|AAF48080.1; n=7; Magnoliophyta|Rep: ... 31 7.5
UniRef50_Q7NEG5 Cluster: 30S ribosomal protein S14 type Z; n=3; ... 31 7.5
UniRef50_O81630 Cluster: F8M12.22 protein; n=8; Arabidopsis thal... 30 9.9
>UniRef50_Q9VH69 Cluster: 40S ribosomal protein S29; n=31;
Eukaryota|Rep: 40S ribosomal protein S29 - Drosophila
melanogaster (Fruit fly)
Length = 56
Score = 117 bits (282), Expect = 5e-26
Identities = 48/56 (85%), Positives = 52/56 (92%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
MG A +WYSHPR+YGQGSR CR+CSNRHGLIRKYGLNICRQCF EYA+DIGFKKLD
Sbjct: 1 MGFATLWYSHPRKYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 56
>UniRef50_P62273 Cluster: 40S ribosomal protein S29; n=66;
Eukaryota|Rep: 40S ribosomal protein S29 - Homo sapiens
(Human)
Length = 56
Score = 106 bits (254), Expect = 1e-22
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCF +YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>UniRef50_P90983 Cluster: Ribosomal protein, small subunit protein
29; n=18; Eukaryota|Rep: Ribosomal protein, small
subunit protein 29 - Caenorhabditis elegans
Length = 56
Score = 99.5 bits (237), Expect = 1e-20
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CF E A DIGFKKLD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>UniRef50_UPI0000E202DC Cluster: PREDICTED: similar to ribosomal
protein S29; n=4; Theria|Rep: PREDICTED: similar to
ribosomal protein S29 - Pan troglodytes
Length = 56
Score = 96.3 bits (229), Expect = 1e-19
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
MGH +++SHP+++GQGSRSCR SNRHG IRKYGLN CRQCF +YA DIGF KLD
Sbjct: 1 MGHQQLYWSHPQKFGQGSRSCRVYSNRHGRIRKYGLNKCRQCFHQYAKDIGFIKLD 56
>UniRef50_Q680P8 Cluster: 40S ribosomal protein S29; n=4;
Eukaryota|Rep: 40S ribosomal protein S29 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 56
Score = 92.7 bits (220), Expect = 2e-18
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCF A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>UniRef50_A1DNZ6 Cluster: 40S ribosomal protein S29, putative; n=2;
Fungi/Metazoa group|Rep: 40S ribosomal protein S29,
putative - Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / NRRL 181)(Aspergillus fischerianus (strain ATCC
1020 / DSM 3700 / NRRL 181))
Length = 86
Score = 89.0 bits (211), Expect = 2e-17
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKL 244
M H ++WYS PR++G+GSR CR C++R GLIRKYG++ICRQCF E A DIGF K+
Sbjct: 1 MTHESVWYSRPRKFGKGSRECRVCAHRAGLIRKYGMDICRQCFREKAQDIGFYKV 55
>UniRef50_O74329 Cluster: 40S ribosomal protein S29; n=12; cellular
organisms|Rep: 40S ribosomal protein S29 -
Schizosaccharomyces pombe (Fission yeast)
Length = 56
Score = 86.2 bits (204), Expect = 1e-16
Identities = 36/54 (66%), Positives = 41/54 (75%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
M H N+W+SHPR+YG+GSR C R GLIRKYGLNI RQ F EYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>UniRef50_Q6CFB0 Cluster: Similar to sp|P41057 Saccharomyces
cerevisiae YLR388w YS29A ribosomal protein S29; n=1;
Yarrowia lipolytica|Rep: Similar to sp|P41057
Saccharomyces cerevisiae YLR388w YS29A ribosomal protein
S29 - Yarrowia lipolytica (Candida lipolytica)
Length = 78
Score = 84.2 bits (199), Expect = 6e-16
Identities = 34/54 (62%), Positives = 41/54 (75%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
M H NIW+SHPR YG+G R CR +N++ +IRKYGLN+CRQ F E A DIGF K
Sbjct: 23 MAHENIWFSHPRHYGKGGRKCRITNNQNAVIRKYGLNLCRQSFREKAADIGFTK 76
>UniRef50_Q1DQB3 Cluster: Predicted protein; n=4;
Pezizomycotina|Rep: Predicted protein - Coccidioides
immitis
Length = 123
Score = 81.8 bits (193), Expect = 3e-15
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
M H +++YS PR YG+GSR CR C+++ GLIRKYGL +CRQCF E + DIGF K
Sbjct: 1 MTHESVFYSRPRNYGKGSRQCRVCAHKAGLIRKYGLLVCRQCFREKSQDIGFVK 54
>UniRef50_Q8INN0 Cluster: CG8495-PC, isoform C; n=1; Drosophila
melanogaster|Rep: CG8495-PC, isoform C - Drosophila
melanogaster (Fruit fly)
Length = 55
Score = 77.0 bits (181), Expect = 9e-14
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 143 RSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
R+CSNRHGLIRKYGLNICRQCF EYA+DIGFKKLD
Sbjct: 21 RACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 55
>UniRef50_P54110 Cluster: 30S ribosomal protein S14P; n=7;
Methanococcales|Rep: 30S ribosomal protein S14P -
Methanococcus jannaschii
Length = 53
Score = 68.1 bits (159), Expect = 4e-11
Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +2
Query: 113 RRYGQGSRSCRSCSN-RHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
++YG G R C+ C + GLIRKYGLN+CRQCF E AH +GFKKLD
Sbjct: 8 KKYGYGIRPCQRCGHVGPGLIRKYGLNLCRQCFREIAHKLGFKKLD 53
>UniRef50_Q4Q817 Cluster: Ribosomal protein s29, putative; n=5;
Trypanosomatidae|Rep: Ribosomal protein s29, putative -
Leishmania major
Length = 57
Score = 66.9 bits (156), Expect = 9e-11
Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 MGHANIWYSHPR-RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKL 244
MGH + W S + G+G+R C CSN+ LIRKY LN+CRQCF E A IGF KL
Sbjct: 1 MGHLDQWRSRQKIGMGKGARCCVICSNQKALIRKYELNVCRQCFRENAEHIGFTKL 56
>UniRef50_UPI0001554864 Cluster: PREDICTED: similar to ribosomal
protein S29; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to ribosomal protein S29 -
Ornithorhynchus anatinus
Length = 168
Score = 65.3 bits (152), Expect = 3e-10
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +2
Query: 143 RSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
R CSNRHGLIRKYGLN+CRQCF +YA DIGF K
Sbjct: 85 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 117
>UniRef50_Q22MB0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 239
Score = 64.9 bits (151), Expect = 4e-10
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +2
Query: 95 IWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKL 244
+W +HPR YG+ S+ CR C R GLI KY + CR+CF E A IGF K+
Sbjct: 5 LWRTHPRNYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPHIGFVKV 54
>UniRef50_O28368 Cluster: 30S ribosomal protein S14P; n=2; cellular
organisms|Rep: 30S ribosomal protein S14P -
Archaeoglobus fulgidus
Length = 51
Score = 62.5 bits (145), Expect = 2e-09
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +2
Query: 119 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
+G+G+ CR C R GLIR YGL +CRQCF E A ++GFKK
Sbjct: 9 FGRGANECRRCGRRRGLIRMYGLYLCRQCFREVASELGFKK 49
>UniRef50_O05635 Cluster: 30S ribosomal protein S14P; n=11;
Thermoprotei|Rep: 30S ribosomal protein S14P -
Sulfolobus acidocaldarius
Length = 54
Score = 59.3 bits (137), Expect = 2e-08
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 113 RRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
RR+G+G + C+ C +R +I+KYGL +CRQCF E A+ +GF+K
Sbjct: 10 RRFGKGVQLCKRCGSRDSVIQKYGLYLCRQCFREVAYPMGFRK 52
>UniRef50_Q74NE6 Cluster: 30S ribosomal protein S14P; n=2;
Archaea|Rep: 30S ribosomal protein S14P - Nanoarchaeum
equitans
Length = 69
Score = 59.3 bits (137), Expect = 2e-08
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +2
Query: 113 RRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
R++G+G+R C C G+IR+YGL +C+ CF E AH++GF K
Sbjct: 24 RKFGKGARRCERCGRYDGIIRRYGLYLCKDCFKEVAHELGFFK 66
>UniRef50_Q013Q2 Cluster: RS29_CULQU 40S ribosomal protein S29; n=1;
Ostreococcus tauri|Rep: RS29_CULQU 40S ribosomal protein
S29 - Ostreococcus tauri
Length = 157
Score = 57.6 bits (133), Expect = 6e-08
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2
Query: 134 RSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
R R C N+ +IRKY LNICRQCF EYA DIGF+K
Sbjct: 120 RRSRVCENQWAIIRKYNLNICRQCFREYAKDIGFQK 155
Score = 36.3 bits (80), Expect = 0.15
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSR 136
MGH+++W SHP YG+GSR
Sbjct: 23 MGHSDVWASHPANYGKGSR 41
>UniRef50_Q8SS73 Cluster: 40S ribosomal protein S29; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S29
- Encephalitozoon cuniculi
Length = 55
Score = 57.6 bits (133), Expect = 6e-08
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +2
Query: 101 YSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
+SH + +G+GSRSC SC G+IRK L +CR+CF EYA DIGF D
Sbjct: 9 HSHRKPFGKGSRSCVSCYTFRGIIRK--LMMCRRCFREYAGDIGFAIYD 55
>UniRef50_Q97BW2 Cluster: 30S ribosomal protein S14P; n=12;
Archaea|Rep: 30S ribosomal protein S14P - Thermoplasma
volcanium
Length = 53
Score = 52.0 bits (119), Expect = 3e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +2
Query: 113 RRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
++YG C C + G++RKYGL++CRQCF E A +GF+K
Sbjct: 10 KKYGHID-GCVRCGRKRGIVRKYGLHLCRQCFRETARQLGFEK 51
>UniRef50_P62012 Cluster: 30S ribosomal protein S14P; n=10;
Archaea|Rep: 30S ribosomal protein S14P - Pyrococcus
abyssi
Length = 56
Score = 51.6 bits (118), Expect = 4e-06
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +2
Query: 110 PRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
PR++G+G+R C C +IR +GL +CR CF E A +GF+K +
Sbjct: 11 PRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRKYE 56
>UniRef50_Q7R0P0 Cluster: GLP_79_44835_45248; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_44835_45248 - Giardia lamblia
ATCC 50803
Length = 137
Score = 50.4 bits (115), Expect = 9e-06
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +2
Query: 134 RSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKL 244
R CR C N + + RKYGL ICR+CF E A IGF KL
Sbjct: 100 RECRICGNYNSVYRKYGLFICRRCFKENAGKIGFVKL 136
>UniRef50_Q9HPC0 Cluster: 30S ribosomal protein S14P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S14P -
Halobacterium salinarium (Halobacterium halobium)
Length = 52
Score = 48.0 bits (109), Expect = 5e-05
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 131 SRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
+ CR C GL+ KY + +CRQCF E A +GFKK
Sbjct: 14 THECRRCGREQGLVGKYDIWLCRQCFREIARSMGFKK 50
>UniRef50_A2ZKX8 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 45.2 bits (102), Expect = 3e-04
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSN 157
MGH+N+W SHP+ YG GSR C CS+
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCFVCSS 26
>UniRef50_P26816 Cluster: 30S ribosomal protein S14P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S14P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 61
Score = 45.2 bits (102), Expect = 3e-04
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +2
Query: 116 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
R GQ SC+ C GL+ KY + +CRQCF E + +GF+K
Sbjct: 19 RTGQ-LESCQRCGREQGLVGKYDIWLCRQCFREISRGMGFRK 59
>UniRef50_UPI000023DF20 Cluster: hypothetical protein FG07181.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07181.1 - Gibberella zeae PH-1
Length = 59
Score = 38.7 bits (86), Expect = 0.028
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRS 148
M H ++W S PR YG+GSRSC S
Sbjct: 1 MSHESVWNSRPRNYGKGSRSCAS 23
>UniRef50_Q8XHT6 Cluster: 30S ribosomal protein S14 type Z; n=83;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Clostridium perfringens
Length = 61
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 98 WYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAH 223
W P+ + CR C H +++K+G ICR CF E A+
Sbjct: 10 WKKEPKYKTRAYTRCRLCGRPHSVLKKFG--ICRICFRELAY 49
>UniRef50_P95911 Cluster: Orf c01013 protein; n=1; Sulfolobus
solfataricus|Rep: Orf c01013 protein - Sulfolobus
solfataricus
Length = 156
Score = 33.1 bits (72), Expect = 1.4
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +1
Query: 10 SSSPS*RCI*LCCSLARNNLIS*NGPRKYLVFSPSQIRTRISVMPILLQQAWLNPQVRFE 189
SSS + I L C + +N+LIS + P +++ PS++ + ILL+ ++ P F+
Sbjct: 40 SSSCTESSILLICLIGKNSLIS-SDPLAVILYLPSEVFSMTPSSSILLRSGYMEPGEGFQ 98
Query: 190 HMQTVL 207
+ +L
Sbjct: 99 NPHVIL 104
>UniRef50_Q9GTH4 Cluster: Nuclear receptor NHR-43; n=3;
Caenorhabditis|Rep: Nuclear receptor NHR-43 -
Caenorhabditis elegans
Length = 459
Score = 31.5 bits (68), Expect = 4.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 140 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>UniRef50_UPI0000F32986 Cluster: UPI0000F32986 related cluster; n=1;
Bos taurus|Rep: UPI0000F32986 UniRef100 entry - Bos
Taurus
Length = 54
Score = 31.1 bits (67), Expect = 5.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 107 HPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKL 244
H +G +R CR + + L+ + + +CR+C + +I F L
Sbjct: 8 HQALFGSQARGCRKVNTLYLLVPYFSITLCRRCCEQNNKNISFLML 53
>UniRef50_UPI0000F211F6 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 446
Score = 30.7 bits (66), Expect = 7.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 48 LVSEKQFNFLKWATQIFGIL 107
LV E+ N L WA QIFG+L
Sbjct: 264 LVEERSINILSWALQIFGLL 283
>UniRef50_Q9LHI5 Cluster: Gb|AAF48080.1; n=7; Magnoliophyta|Rep:
Gb|AAF48080.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 292
Score = 30.7 bits (66), Expect = 7.5
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 180 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 73
+ RIK PCLL HDRDP PYL E Q+ W + R
Sbjct: 38 FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71
>UniRef50_Q7NEG5 Cluster: 30S ribosomal protein S14 type Z; n=3;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Gloeobacter violaceus
Length = 68
Score = 30.7 bits (66), Expect = 7.5
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2
Query: 140 CRSCSNRHGLIRKYGLNICRQCFXEYAH 223
C C G IR +GL CR CF E AH
Sbjct: 31 CWRCGRPRGYIRDFGL--CRICFREMAH 56
>UniRef50_O81630 Cluster: F8M12.22 protein; n=8; Arabidopsis
thaliana|Rep: F8M12.22 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1662
Score = 30.3 bits (65), Expect = 9.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 79 NGPRKYLVFSPSQIRTRISVMPILLQQAWLNPQVRFEHMQTVLXRVCS 222
NG RK+L P Q+RT M L ++ LN ++R +Q L + S
Sbjct: 646 NGQRKHL---PDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAMS 690
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,297,612
Number of Sequences: 1657284
Number of extensions: 4857032
Number of successful extensions: 10719
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 10506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10716
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11514999177
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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