Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F05
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   2.1  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   3.7  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   3.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   4.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   4.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 9    FKFAILKVYLTLLLVSEKQFNFLKWATQ 92
            +  +I  +YL L+L S    N + W T+
Sbjct: 1035 YLLSIPSMYLLLILYSIINLNVVSWGTR 1062


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 9    FKFAILKVYLTLLLVSEKQFNFLKWATQ 92
            +  +I  +YL L+L S    N + W T+
Sbjct: 1035 YLLSIPSMYLLLILYSIINLNVVSWGTR 1062


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 9    FKFAILKVYLTLLLVSEKQFNFLKWATQ 92
            +  +I  +YL L+L S    N + W T+
Sbjct: 1035 YLLSIPSMYLLLILYSIINLNVVSWGTR 1062


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 9    FKFAILKVYLTLLLVSEKQFNFLKWATQ 92
            +  +I  +YL L+L S    N + W T+
Sbjct: 1035 YLLSIPSMYLLLILYSIINLNVVSWGTR 1062


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 106 RIPNICVAHFKKLNCFSLTSNK 41
           R PNIC      L  F  T+N+
Sbjct: 319 RTPNICYKLLSNLGIFPKTTNE 340


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 79  FKKLNCFSLTSNKVRYTFK 23
           F+K+ C +    K RYT K
Sbjct: 57  FRKIQCSNSPLRKARYTEK 75


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 106 RIPNICVAHFKKLNCFSLTSNKVRY 32
           +I +IC  H   L C  LT  K+RY
Sbjct: 112 QICHICELHTIFLVCNVLTVFKIRY 136


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 140 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
           C++      +I K   N CR C  +   ++G  K
Sbjct: 74  CKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNK 107


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 140 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
           C++      +I K   N CR C  +   ++G  K
Sbjct: 74  CKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNK 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,784
Number of Sequences: 336
Number of extensions: 1261
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)