Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_F05
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 100 6e-22
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 31 0.23
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 31 0.23
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 27 3.8
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 27 5.0
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 5.0
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 26 8.7
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 26 8.7
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 26 8.7
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 99.5 bits (237), Expect = 6e-22
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +2
Query: 80 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 247
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CF E A DIGFKKLD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 140 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
CR C R+ + +G++ICR C + + KK
Sbjct: 47 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 140 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 241
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 127 RISVMPILLQQAWLNPQVRFEHMQTVLXRVCS*H 228
RI P++L+Q WL R E R+CS H
Sbjct: 27 RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 139 MPILLQQAWLNPQVRFEHMQTVLXRVCS*HRIQE 240
M I + + WL+P ++F+H+ + H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 74 LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 181
LK A W+ +P+R G +R C SC ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 182 RTCGLSHACWSRIGMTEILVRICEGEN 102
R C ++H C+S + E + CEGEN
Sbjct: 40 RVCPVAH-CYSSLTAPEPMTSTCEGEN 65
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 133 SVMPILLQQAWLNPQVRFEHMQTV--LXRVCS*HR-IQEAGLNGVXIIN 270
S M IL Q W +P + FEH + L + HR + L V I+N
Sbjct: 131 STMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVN 179
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 133 SVMPILLQQAWLNPQVRFEHMQTV--LXRVCS*HR-IQEAGLNGVXIIN 270
S M IL Q W +P + FEH + L + HR + L V I+N
Sbjct: 131 STMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVN 179
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 139 MPILLQQAWLNPQVRFEHMQTVL 207
+ +L Q W +P++RF+H+ L
Sbjct: 80 LDLLFSQIWHDPRLRFDHLTNCL 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,202,803
Number of Sequences: 27780
Number of extensions: 117241
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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