Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F04
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   289   1e-78
Z54284-5|CAA91062.1|  444|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    28   5.0  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    28   5.0  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  289 bits (709), Expect = 1e-78
 Identities = 137/168 (81%), Positives = 149/168 (88%)
 Frame = +2

Query: 149 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 328
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 329 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 508
           RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 509 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTIAXCVAXELI 652
           AGTVRRQAVDV+PLRRVNQAIWLLCTGAREAAF N+KTIA C+A ELI
Sbjct: 137 AGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELI 184


>Z54284-5|CAA91062.1|  444|Caenorhabditis elegans Hypothetical
           protein D2085.6 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = -2

Query: 232 VVLQRHIRDLHIVATPSAEKLDFRNVGGLW*RHGFHNHAACLGYVVIPVLLGHELVLFYY 53
           V+L+ +++ +H  +T S+   +   +GGL          +  G+     +L ++LVL Y 
Sbjct: 91  VLLRENVQIIHGHSTFSSLAHETLMIGGLMGLRTVFTDHSLFGFADASAILTNKLVLQYS 150

Query: 52  *IEIITSHCQKYTRKK 5
            I +  + C  YT K+
Sbjct: 151 LINVDQTICVSYTSKE 166


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 604 CSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 500
           C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 495 CTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 604 CSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 500
           C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 458 CTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 604 CSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 500
           C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 495 CTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 604 CSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 500
           C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 197 CTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,357
Number of Sequences: 27780
Number of extensions: 318796
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)