Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_F02
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 182 1e-46
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 182 2e-46
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 8e-39
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 148 3e-36
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 79 3e-15
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 4e-14
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 52 2e-07
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.092
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 29 2.6
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9) 29 2.6
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05) 28 6.1
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2) 28 6.1
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13) 27 8.0
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 27 8.0
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 182 bits (444), Expect = 1e-46
Identities = 83/109 (76%), Positives = 94/109 (86%)
Frame = +3
Query: 213 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 392
YVAF+DTERLIGDAAKNQVAMNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +
Sbjct: 41 YVAFSDTERLIGDAAKNQVAMNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGER 100
Query: 393 PKIXVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVXNAVITVPAY 539
PKI V +KGE K+FFPEE+SSMVLTKMKETAEAYLG V +AV+TVPAY
Sbjct: 101 PKIQVEFKGEKKSFFPEEISSMVLTKMKETAEAYLGAKVTDAVVTVPAY 149
Score = 66.5 bits (155), Expect = 1e-11
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = +2
Query: 98 KHPQLGIDLGTTYSCVGVFQHGKVEIIANDQGQQ 199
K P +GIDLGTTYSCVGVFQHGKVEIIANDQG +
Sbjct: 3 KTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNR 36
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 182 bits (443), Expect = 2e-46
Identities = 84/109 (77%), Positives = 96/109 (88%)
Frame = +3
Query: 213 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 392
YV FTDTERL+GDAAKNQVA+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD K
Sbjct: 41 YVGFTDTERLVGDAAKNQVALNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNK 100
Query: 393 PKIXVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVXNAVITVPAY 539
PKI V YKGE KTF EE+SSMVL KMKETAEAYLG+ V +AVITVPAY
Sbjct: 101 PKIQVEYKGERKTFAAEEISSMVLGKMKETAEAYLGQKVTSAVITVPAY 149
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +2
Query: 98 KHPQLGIDLGTTYSCVGVFQHGKVEIIANDQGQQ 199
K P +GIDLGTTYSCVGVFQ+GKVEIIANDQG +
Sbjct: 3 KAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNR 36
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 157 bits (380), Expect = 8e-39
Identities = 84/134 (62%), Positives = 94/134 (70%), Gaps = 25/134 (18%)
Frame = +3
Query: 213 YVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGK 392
YVAFTD ERL+GDAAKNQVAMNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+
Sbjct: 41 YVAFTDEERLVGDAAKNQVAMNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGR 100
Query: 393 PKIXVAYKGEDKTFFPEEV-------------------------SSMVLTKMKETAEAYL 497
PK+ V YKGE KTFF EEV SSMVL KMKETAEAYL
Sbjct: 101 PKVKVEYKGETKTFFAEEVVNEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYL 160
Query: 498 GKTVXNAVITVPAY 539
G V +AV+TVPAY
Sbjct: 161 GCKVTDAVVTVPAY 174
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = +2
Query: 98 KHPQLGIDLGTTYSCVGVFQHGKVEIIANDQGQQ 199
K P +GIDLGTTYSCVGVFQHGKVEIIANDQG +
Sbjct: 3 KAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNR 36
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +3
Query: 444 EVSSMVLTKMKETAEAYLGKTVXNAVITVPAY 539
++SSMVL KMKETAEAYLG V +AV+TVPAY
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAY 242
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 148 bits (359), Expect = 3e-36
Identities = 72/110 (65%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Frame = +3
Query: 213 YVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGG 389
YVAFT+ ERLIGD AKNQ+ NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV
Sbjct: 738 YVAFTEEGERLIGDGAKNQLTTNPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNK 797
Query: 390 KPKIXVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVXNAVITVPAY 539
KP + V K E KTF EE+S+MVLTKMKETAEAYLGK V +AV+TVPAY
Sbjct: 798 KPHVQVKVKDEIKTFAAEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAY 847
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +2
Query: 110 LGIDLGTTYSCVGVFQHGKVEIIANDQGQQ 199
+GIDLGTTYSCVGVF++G+VEIIANDQG +
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNR 733
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 78.6 bits (185), Expect = 3e-15
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +3
Query: 216 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGK 392
VAFTD L+G+ A +Q +NP NTI+DAKR IG+ F + K + F V +D G
Sbjct: 71 VAFTDKGVLVGEKALSQAEINPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGN 130
Query: 393 PKIXVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVXNAVITVPA 536
V KG PEE+ V+ K++ AE L TV AV++VPA
Sbjct: 131 AGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERNLTTTVTKAVMSVPA 178
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/28 (53%), Positives = 23/28 (82%), Gaps = 2/28 (7%)
Frame = +2
Query: 110 LGIDLGTTYSCVGVFQ--HGKVEIIAND 187
+GIDLGTTYSCVG +Q G+++I +++
Sbjct: 34 IGIDLGTTYSCVGAYQAISGRIDIFSDE 61
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 74.9 bits (176), Expect = 4e-14
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +3
Query: 276 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIXVAYKGEDKTFFPEEVS 452
N NTI KR IGRKF D VQ ++ H P++VV I V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 453 SMVLTKMKETAEAYLGKTVXNAVITVPAY 539
+M+ T++K TAE L V + VI+VP+Y
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPSY 206
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +3
Query: 399 IXVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVXNAVITVPAY 539
I V GE ++F PE++S++VL ++K AEA+LG+ V AVITVPA+
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAH 48
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 33.9 bits (74), Expect = 0.092
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 411 YKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVXNAVITVPAY 539
Y+ D TF PEE+ M+L + E + + + V+TVP +
Sbjct: 73 YQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPF 115
>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
Length = 420
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 297 RILCCWGSSPPGSWRH 250
R++CC G SP WRH
Sbjct: 395 RVVCCQGDSPSPRWRH 410
>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
Length = 340
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 297 RILCCWGSSPPGSWRH 250
R++CC G SP WRH
Sbjct: 170 RVVCCQGDSPSPRWRH 185
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -3
Query: 487 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 308
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 307 RLASNIVL 284
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = -1
Query: 189 WSLAMISTFPCWKTPTQEYVVPRSIPSCGCFCHFVFLISRCYLFVKTTQQTCAI 28
W L++ S WK P + + +P C + + C + K ++CAI
Sbjct: 368 WKLSLRSCTIIWKLPVRSCTIIWKLPVRSCAIIWKLSLRSCTIIWKLRLRSCAI 421
>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
Length = 1264
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 224 HRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASRHEALA 364
H R +R+ + GG +EP + R T T C+CA R+ + A
Sbjct: 421 HGERHGYRKLSRVCGGRRPNEPYERTARVHTILSTDTETCFCAKRYGSAA 470
>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
Length = 451
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 361 QCFMSACTVASSNLRPMRRLASNIVLLGFIATWFLAASPMRRSVSVNAT 215
QCF+S C + S + + R+ L TW + + M S +AT
Sbjct: 169 QCFLSVCDLCCSLMTQIPRMRHTWDFLEHAPTWISSQTSMSFSAITDAT 217
>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
Length = 822
Score = 27.5 bits (58), Expect = 8.0
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 466 VSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMS-ACTVASSNLRPMRRLASNI 290
VST+++T G +L+ T LG+ + T S S T+ S +L PMRR +
Sbjct: 751 VSTVDVTLDGLYILAGT--TTGNLGVLNASTRSYTTLMRSHTSTITSMDLDPMRRHMGTV 808
Query: 289 VLLGFIATWFL 257
G I W L
Sbjct: 809 SADGTIRIWDL 819
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 224 HRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASR 349
H R +R+ ++ GG +EP + R T T C+CA R
Sbjct: 282 HGKRHGYRKLSRDCGGRRPNEPYERTARVHTILSTDTETCFCAKR 326
>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1830
Score = 27.5 bits (58), Expect = 8.0
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +2
Query: 68 QRLIKNTKWQKHPQLGIDLGTTYSCVGVFQHGKVEIIANDQGQQDHSVLCCVH--RHRAS 241
+R + ++ HP+L ++ G +Q E+ Q + H V C R RAS
Sbjct: 757 RRWRRESRAPNHPRLDLNTLDESKPEGAWQSA-TELT---QQTKRHFVSCSRRWPRGRAS 812
Query: 242 HRRCRQEPGGDEPQQHNI-RCQTSHR 316
HR C + P P++H + R + +H+
Sbjct: 813 HRACARAPKMPPPERHALTRLRHTHQ 838
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,973,730
Number of Sequences: 59808
Number of extensions: 354919
Number of successful extensions: 930
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -