Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_F02
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   6.5  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   8.6  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +2

Query: 95  QKHPQLGIDLGTTYSCVGVFQHGKVEIIANDQGQQDHSVLCCVHRHRASHRRCRQEPGGD 274
           ++  QL  DLG T + + ++   K   I    GQ++   L  + +   +H     +  G+
Sbjct: 48  RRRQQLSRDLGLTEAQIKIWFQNKRAKIKKASGQKNPLALQLMAQGLYNHSTVPVDEDGE 107

Query: 275 E 277
           E
Sbjct: 108 E 108


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 128 TTYSCVGVFQHGKVEIIANDQGQQDHSV 211
           T YSC       K  II ND+ Q D  V
Sbjct: 73  TNYSCFITCALEKSHIIQNDEIQLDKLV 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,462
Number of Sequences: 438
Number of extensions: 2690
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)