Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E19
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   153   2e-38
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   153   2e-38
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    26   2.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   5.8  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   7.6  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  153 bits (370), Expect = 2e-38
 Identities = 73/119 (61%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
 Frame = +2

Query: 83  NLYIMLKSEGKDKSSSGPASKVIVKFLTVMMKHGYIGXFEIVDDHRAGKIVVNLTGRLNK 262
           N  +  +  G+ +    P+SKVIVKFLTVM KHGYI  F  +DDHR+GKIV+ L GR+NK
Sbjct: 12  NNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINK 71

Query: 263 CGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 436
           CGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H  A  K  GGKILGFF+
Sbjct: 72  CGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 52  LRMNVLSDALKSIHNAEKRGKRQVLIRP 135
           +R +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 2   VRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  153 bits (370), Expect = 2e-38
 Identities = 73/119 (61%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
 Frame = +2

Query: 83  NLYIMLKSEGKDKSSSGPASKVIVKFLTVMMKHGYIGXFEIVDDHRAGKIVVNLTGRLNK 262
           N  +  +  G+ +    P+SKVIVKFLTVM KHGYI  F  +DDHR+GKIV+ L GR+NK
Sbjct: 12  NNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINK 71

Query: 263 CGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 436
           CGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H  A  K  GGKILGFF+
Sbjct: 72  CGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 52  LRMNVLSDALKSIHNAEKRGKRQVLIRP 135
           +R +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 2   VRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 19  RYEARAKSXP-W-LRMNVLSDALKSIHNAEKR 108
           RY +   + P W LR+N+L   L ++H AEKR
Sbjct: 120 RYRSGIATIPEWTLRVNMLESMLYALHYAEKR 151


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 341 FGYLVLTTSGGIMDHEXAXXKHLGGKIL 424
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 345 PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTTILP 223
           P  ++ SR+   SI +    K   + PH+ ++P  +T I+P
Sbjct: 30  PTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVP 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,197
Number of Sequences: 5004
Number of extensions: 30327
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)