Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E17
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    29   0.59 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   2.4  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   4.1  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.5  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   9.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   9.5  

>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 548 CMSNESTVHTVSAMSDSTFGIYVLSTSSTPS 456
           C+S +   + V  + D TFG   L+T+ TPS
Sbjct: 29  CISIDEVYNVVRKVGDGTFGSVYLATTKTPS 59


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 593 AKHQFELPSWYSSANCMSNESTVHTVSAMSDSTFGIYVLSTSSTPSMLSAEP 438
           A HQ  +P +  +   +SNE    T+   S   F  Y+ S  ST + L+ EP
Sbjct: 181 ASHQI-VPQYSENNPRVSNEPPRVTIENASLKPFSGYIKSHMSTSNFLNGEP 231


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 614 MWNGNSDAKHQFELPSWYSSANCMSNE 534
           ++NG  + K +F + SW SS N +  E
Sbjct: 251 VFNGKKNRKQRFRIRSWRSSLNFLVKE 277


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 121 IKLKLNSSVIYIYIKVNCTYFIMNESFLNPIPEPKKIGVWA----EGTHIXAKEFMIP 282
           ++ KL    I + +  + T+F+ N++F N I    + G W+     G H    EF IP
Sbjct: 261 VEKKLKRYYIRVLLVQSITFFLFNDAFRNSITVLFEDGKWSPPIVPGLHSRV-EFTIP 317


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 590 KHQFELPSWYSSANCMSNESTVHTVSAMSDSTFGIYVLSTSSTPSMLSAEPL 435
           K    LP+ Y++++    ESTV++ +++S +     +L  S   ++L A  L
Sbjct: 49  KQNLNLPNSYTNSSQKVRESTVNSQASLSSNDLRTELLIKSGENAILRANLL 100


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 352 EKEISSLPVPTQKNTETVNTLTEVGGGISGSADSIEGVLEVLKTYIPKVESDIA 513
           E+E   L V      + V T TEV     G  D++  + +V+K  I K + D+A
Sbjct: 574 EQEGEKLLVLHVSEKDPVGTFTEVLKNPFGLEDALTEMEKVIKNLIDKSKYDLA 627


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -2

Query: 608 NGNSDAKHQFELPSWYSSANCMSNESTVHTVSAMSDSTFGIYVLSTSSTPSMLSAEPLI 432
           N +++ KH     S   S++  S+    H V A +D+T  I +   +   S  S+ P +
Sbjct: 17  NSSTNPKHANSESSPLLSSDFSSSSKDYHKVGAFTDNTNAINIPEQTRGVSHTSSSPSV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,432
Number of Sequences: 5004
Number of extensions: 46921
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)