Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E17
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427... 32 0.46
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 31 1.1
07_03_1685 + 28645284-28645454,28645681-28647069 30 1.4
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.4
11_01_0475 - 3669734-3671452 28 5.6
06_03_0444 + 20864183-20864436,20864831-20865818 28 5.6
09_04_0164 + 15265878-15268701,15268782-15269200 27 9.9
09_02_0408 - 8638298-8638594,8638717-8639103,8639415-8640413,864... 27 9.9
01_01_0092 + 722744-723459,723542-723711,723792-724885 27 9.9
>03_05_0229 -
22142255-22142344,22142471-22142527,22142621-22142705,
22143552-22143677,22143750-22143793,22143877-22143999,
22144078-22144216,22148795-22151292
Length = 1053
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +1
Query: 439 GSADSIEGVLEVLKTYIPKVESDIADTVWTVDSLLMQLAEEYQEGNSN*CFASLLPFHIC 618
G+++ V+E ++ ESD+ T V S+ +Q++ E+ + ++ CFA F
Sbjct: 302 GTSNEWSSVIEAANEWLALAESDMLTTTAGVASVALQMSYEHLQPDTKRCFAFCALFPEA 361
Query: 619 LQLD 630
++D
Sbjct: 362 FEVD 365
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 189 HYEICTIHLDVDVDDATVKLEFYVKYIYVIVK*FSCTSALDSINLSL 49
H + +I LDVDVD +T + Y++V V CT L I+ +L
Sbjct: 1036 HVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVGAEKCTDPLREIDWTL 1082
>07_03_1685 + 28645284-28645454,28645681-28647069
Length = 519
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 385 QKNTETVNTLTEVGGGISGSADSIEGVL---EVLKTYIPKVESDIADTVWTVDSLLMQLA 555
++++E V T E+GG S + VL E K Y+ + +D+A+ +V+SL ++A
Sbjct: 124 RRSSENVETDGELGGLDSQNLQPPSSVLMQLEQAKAYLTRTTADLAEIRASVESLCNEIA 183
Query: 556 EE 561
+E
Sbjct: 184 KE 185
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 608 NGNSDAKHQFELPSWYSSANCMSNESTV 525
N NSDA Q + PSWYSS + + T+
Sbjct: 1340 NWNSDATQQDDKPSWYSSNSAGTQNFTI 1367
>11_01_0475 - 3669734-3671452
Length = 572
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 472 VLKTYIPKVESDIADTVWTVDSLLMQLAEEYQEGNSN*CFASLLPFHICLQLDIPTL 642
++KT+I +V+ D WT+D+++ A E ++ +P H + +D P L
Sbjct: 339 IIKTWILRVDDGSGDMAWTMDAMVD--ASELWSSHAYAGLPHAIPEHPIVSIDDPHL 393
>06_03_0444 + 20864183-20864436,20864831-20865818
Length = 413
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 433 ISGSADSIEGVLEVLKTYIP 492
++ A SI+GVL+ LKTY+P
Sbjct: 389 VAACAASIQGVLDSLKTYVP 408
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 625 TVNKCGMVTVMQNISLNCLPGILQLTA*VTNLLSTQYL 512
T+ KC +T + N+S N L G++ N ST YL
Sbjct: 629 TLTKCTTLTYL-NLSYNDLAGVVPTAGVFANFTSTSYL 665
>09_02_0408 -
8638298-8638594,8638717-8639103,8639415-8640413,
8640501-8640655,8640768-8640855,8640941-8641044,
8641199-8641421,8641536-8641620,8641706-8642097,
8642962-8643150
Length = 972
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 530 TVHTVSAMSDSTFGIYVLSTSSTPSMLSAEPLI 432
T H ++ + +FG YV+S ++ PS + A L+
Sbjct: 518 TFHVIAELPADSFGAYVISMATAPSDVLAVELL 550
>01_01_0092 + 722744-723459,723542-723711,723792-724885
Length = 659
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 566 WYSSANCMS--NESTVHTVSAMSDSTFGIYVLSTSSTPSMLSAEP 438
W + NC N V+ +S +T +YVL+TSS+ + + EP
Sbjct: 136 WATFLNCSRAINNGMYMPVACLSGNTSFVYVLTTSSSYYVQNIEP 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,964
Number of Sequences: 37544
Number of extensions: 261718
Number of successful extensions: 580
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -