Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E15
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 120 1e-28
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 31 0.19
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 27 2.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 7.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 9.5
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 9.5
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 9.5
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 120 bits (290), Expect = 1e-28
Identities = 66/178 (37%), Positives = 104/178 (58%), Gaps = 1/178 (0%)
Frame = +3
Query: 99 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 278
+H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + +
Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83
Query: 279 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIXVICVGXKSR 455
+ A PE+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G K R
Sbjct: 84 KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142
Query: 456 GILXRLYGKHIIXVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSY 629
L R + IG P+F +A Q+++ IL ++ ++YNKF S VS+
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSF 200
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 30.7 bits (66), Expect = 0.19
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 297 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIXVICVGXKSRGI 461
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC +
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128
Query: 462 LXRLYGKHIIXVA 500
L +Y + VA
Sbjct: 129 LMTVYSLGELAVA 141
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 648 GASRTGRTIPQT*TCYK*SFRNQTRILR*EWQW 550
GAS+T P + +C F N+ L+ EW W
Sbjct: 45 GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 330 AMTSDRGLCGAVHTGVSKVIRNRLSE 407
A+ SD +C V TG+S ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 535 TQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSP 639
TQ +PL FSP+ +S+ S + S + P P
Sbjct: 1403 TQTDFPLVFSPERSSIDINASSMRSEKASFEIPFP 1437
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 153 KSVKNIQKITQSMKMVSAAKYTRAERDLK 239
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 114 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 236
+N KAI I K VKNI T ++++ RA + L
Sbjct: 1071 KNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 303 EDDPKQLFVAMTSDRGLCGAVHT--GVS 380
+ +P L VA+ SDR CG+++ GVS
Sbjct: 876 KQNPYDLLVALDSDRKACGSLYVDDGVS 903
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 39 ICKMLGRFGPGVGTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 215
+ LG F VG A V P N+A + +R K+V ++ K+ + +Y
Sbjct: 69 LADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQY 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,297
Number of Sequences: 5004
Number of extensions: 61443
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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