Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E13
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   217   1e-57
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   217   1e-57
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    36   0.003
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   1.5  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   4.5  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   4.5  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  217 bits (529), Expect = 1e-57
 Identities = 101/141 (71%), Positives = 117/141 (82%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 240 XXEVEKIITIMSNPRQYKIPXWFLNXQKDIVDGKYSQLTSSNLDSKLREXLERLXXIRAH 419
             E+E+I+TI+ NP Q+KIP WFLN QKDI DGK  QL ++N+DSKLRE LERL  I+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 420 RGMRHYWGLRVRGQHTXTTGR 482
           RG+RH   LRVRGQHT TTGR
Sbjct: 121 RGLRHALDLRVRGQHTKTTGR 141


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  217 bits (529), Expect = 1e-57
 Identities = 101/141 (71%), Positives = 117/141 (82%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 240 XXEVEKIITIMSNPRQYKIPXWFLNXQKDIVDGKYSQLTSSNLDSKLREXLERLXXIRAH 419
             E+E+I+TI+ NP Q+KIP WFLN QKDI DGK  QL ++N+DSKLRE LERL  I+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 420 RGMRHYWGLRVRGQHTXTTGR 482
           RG+RH   LRVRGQHT TTGR
Sbjct: 121 RGLRHALDLRVRGQHTKTTGR 141


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 390 LERLXXIRAHRGMRHYWGLRVRGQHTXTTGR 482
           + RL  IR +RGMRH  GL V GQ+T T  +
Sbjct: 77  ISRLVNIRCYRGMRHVNGLPVNGQNTRTNAK 107


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 390 NXHGVLNPSWRRSAGCIYHQQYPFAYLGTSXVSY 289
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 289 YCLGFDMIVIIFSTSXXVHSPARLSRSMSAFLRTMLEYLR 170
           YC  F  +  +   +  V+SP  ++  M+ F+R +L YL+
Sbjct: 58  YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 123 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 215
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 119 DVXIHDTKNMLKFVWNDQRHFG*VSNQRSQN 27
           D  + +  + +KF WN       VSN +S+N
Sbjct: 147 DKAVENNSDFIKFDWNSDEDEDSVSNDKSKN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,627
Number of Sequences: 5004
Number of extensions: 36636
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)