Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E13
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582          210   3e-55
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...   200   6e-52
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337...   198   2e-51
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978           88   3e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372     37   0.007
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83...    30   0.85 
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045...    28   3.4  
03_01_0646 + 4742398-4742994,4743681-4744085                           27   6.0  
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084     27   7.9  

>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
          Length = 148

 Score =  210 bits (514), Expect = 3e-55
 Identities = 89/135 (65%), Positives = 117/135 (86%)
 Frame = +3

Query: 78  DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTXXEVEK 257
           + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI  KKADID++KRAGE T  E+E+
Sbjct: 3   EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62

Query: 258 IITIMSNPRQYKIPXWFLNXQKDIVDGKYSQLTSSNLDSKLREXLERLXXIRAHRGMRHY 437
           ++T+++NPRQ+K+P WFLN +KD  DG++SQ+ S+ LD KLR+ LERL  IR HRG+RHY
Sbjct: 63  LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122

Query: 438 WGLRVRGQHTXTTGR 482
           WGLRVRGQHT TTGR
Sbjct: 123 WGLRVRGQHTKTTGR 137


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score =  200 bits (487), Expect = 6e-52
 Identities = 93/157 (59%), Positives = 121/157 (77%), Gaps = 16/157 (10%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
           MSL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR     
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60

Query: 225 -----------AGECTXXEVEKIITIMSNPRQYKIPXWFLNXQKDIVDGKYSQLTSSNLD 371
                      AGE T  E+E+++T+++NPRQ+K+P WFLN +KD  DG++SQ+ S+ LD
Sbjct: 61  YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120

Query: 372 SKLREXLERLXXIRAHRGMRHYWGLRVRGQHTXTTGR 482
            KLR+ LERL  IR HRG+RHYWGLRVRGQHT TTGR
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 157


>03_06_0283 -
           32832572-32832677,32833343-32833531,32833582-32833796,
           32833900-32833902
          Length = 170

 Score =  198 bits (483), Expect = 2e-51
 Identities = 93/159 (58%), Positives = 121/159 (76%), Gaps = 18/159 (11%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
           MSL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR     
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60

Query: 225 -------------AGECTXXEVEKIITIMSNPRQYKIPXWFLNXQKDIVDGKYSQLTSSN 365
                        AGE T  E+E+++T+++NPRQ+K+P WFLN +KD  DG++SQ+ S+ 
Sbjct: 61  PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120

Query: 366 LDSKLREXLERLXXIRAHRGMRHYWGLRVRGQHTXTTGR 482
           LD KLR+ LERL  IR HRG+RHYWGLRVRGQHT TTGR
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 159


>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
          Length = 78

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = +3

Query: 303 WFL-NXQKDIVDGKYSQLTSSNLDSKLREXLERLXXIRAHRGMRHYWGLRVRGQHTXTTG 479
           W L   +KD  DG++SQ+ S+ LD KLR+ LERL  IR HRG+RHYWGLRVRGQHT TTG
Sbjct: 7   WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTG 66

Query: 480 R 482
           R
Sbjct: 67  R 67


>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
          Length = 161

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +3

Query: 381 REXLERLXXIRAHRGMRHYWGLRVRGQHTXTTGR 482
           R  +ERL  IR +RG+RH  GL VRGQ T    R
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCR 141


>03_01_0104 -
           830884-831282,831511-832205,832368-833387,833570-833696,
           834342-834709,834780-835059,835137-835466
          Length = 1072

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +3

Query: 168 GRRYSNIV--LKKADIDLDKRAGECTXXEVEKIITIMSNPRQYKIPXWFLNXQKDIVDGK 341
           G+ + N++  LK  D DL     E       K+  +MS P   K+  W +    D+ DGK
Sbjct: 514 GKPWRNVLEHLKIQDTDLWSSTNEDNCLWNAKLFPVMSLPETLKVGMWLMGSTCDL-DGK 572

Query: 342 YSQLTSSNLDSKLRE 386
            + L   +    L E
Sbjct: 573 VASLWKESRRISLEE 587


>06_03_1275 +
           28903961-28904123,28904225-28904322,28904406-28904550,
           28904690-28904814,28904957-28905049,28905297-28905362,
           28905459-28905524,28905790-28905870,28905947-28906123,
           28906212-28906287,28906394-28906521,28906639-28906950
          Length = 509

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 205 SAFLRTMLEYLRPTPLIAVIANITL 131
           S+FL TM EY+R  P  A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279


>03_01_0646 + 4742398-4742994,4743681-4744085
          Length = 333

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 143 CDDGYQRCWPEVLQHCSQKSR 205
           CDD Y+R W  +L+   ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316


>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
          Length = 156

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 313 FRNQXGILYCLGFDMIVIIFSTSXXVHSPARLS 215
           F N     YCLG  +I ++++T+       RLS
Sbjct: 40  FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,004,472
Number of Sequences: 37544
Number of extensions: 238796
Number of successful extensions: 548
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)