Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E13
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.1  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 291 KIPXWFLNXQKDIVD 335
           KI  WFL+  K+I+D
Sbjct: 275 KIDKWFLHKMKNIID 289


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = -3

Query: 298 GILYCLGFDMIVIIFSTSXXVHSPARLSRSMSAFLRTMLEYLRPTPLI 155
           G +  +G  M+V IF ++  + +P+ L     A    ++ +    P++
Sbjct: 63  GFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMV 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 184 LEYLRPTPLIAVIANITLRL 125
           L Y+R  P +  +A  TLRL
Sbjct: 519 LPYIRLIPKVTAVAGETLRL 538


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 184 LEYLRPTPLIAVIANITLRL 125
           L Y+R  P +  +A  TLRL
Sbjct: 519 LPYIRLIPKVTAVAGETLRL 538


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 213 DQCRLF*EQCWS 178
           D+C    EQCWS
Sbjct: 829 DECWRLMEQCWS 840


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 213 DQCRLF*EQCWS 178
           D+C    EQCWS
Sbjct: 867 DECWRLMEQCWS 878


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -3

Query: 292 LYCLGFDMIVIIFSTSXXVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITL 131
           + C+   MI I F+TS  +    R    +   + T+   L PT   ++ A+  L
Sbjct: 540 MLCIPGYMIYIWFTTSGTISEKFRKLIRIEDDVATLRMKLNPTKAASINADFEL 593


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -3

Query: 292 LYCLGFDMIVIIFSTSXXVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITL 131
           + C+   MI I F+TS  +    R    +   + T+   L PT   ++ A+  L
Sbjct: 593 MLCIPGYMIYIWFTTSGTISEKFRKLIRIEDNVATLRMKLNPTKAASINADFEL 646


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 165 VGRRYSNIVLKKADIDLDKRAGECTXXEVEKIITI 269
           +G+R S  V         K A   T  E+EKI T+
Sbjct: 3   LGQRISGAVAVLRGTSEVKEAQTSTSDEIEKITTV 37


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 298 GILYCLGFDMIVIIFSTSXXVHSPARL 218
           G +  +G  M+V IF ++  + +P+ L
Sbjct: 29  GFVSVMGNGMVVYIFLSTKSLRTPSNL 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,880
Number of Sequences: 438
Number of extensions: 2647
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)