Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E11
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 227 8e-61
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 227 8e-61
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 43 3e-05
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 3.2
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 5.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.5
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 5.5
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 25 9.6
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 227 bits (555), Expect = 8e-61
Identities = 104/143 (72%), Positives = 121/143 (84%)
Frame = +3
Query: 45 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 224
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+ K+GV AK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 225 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRF 404
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ NDE L++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 405 KVVKVANVSLLALYKEKKERPRS 473
KVVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 227 bits (555), Expect = 8e-61
Identities = 104/143 (72%), Positives = 121/143 (84%)
Frame = +3
Query: 45 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 224
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+ K+GV AK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 225 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRF 404
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ NDE L++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 405 KVVKVANVSLLALYKEKKERPRS 473
KVVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 43.2 bits (97), Expect = 3e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +3
Query: 171 GASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLV 350
G+ +G+ V K+PNSA+RK RV+L G+ VTA++P G ++ + + L+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 351 AGFGRKGHAVGDIPGVRFKVVK 416
G GR D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 352 ATSXSSFXSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 236
++S S F S+WFRQ + AVT+F MS HL A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 108 WADKEFKKAHMGTKWKANPFGGASHAKGIV 197
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 114 PPIAVHDGGSRAYAP 70
PP AV GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 470 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 348
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 167 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYS 60
E + LP R + L FF +PSL + + +++ ++ S
Sbjct: 200 EPLPLPARPQISDLSFFRKPSLPSALQNIVIEKNAS 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,177
Number of Sequences: 5004
Number of extensions: 44363
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -