Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E11
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 239 8e-64
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 235 2e-62
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 140 5e-34
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 49 2e-06
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 28 4.2
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.2
10_07_0138 + 13325418-13325954 25 7.1
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 7.4
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 7.4
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 239 bits (586), Expect = 8e-64
Identities = 108/148 (72%), Positives = 124/148 (83%)
Frame = +3
Query: 30 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKV 209
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVL K+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 210 GVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDI 389
G+ AKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE NDE L+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 390 PGVRFKVVKVANVSLLALYKEKKERPRS 473
PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 231 bits (566), Expect = 2e-61
Identities = 105/141 (74%), Positives = 119/141 (84%)
Frame = +3
Query: 45 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 224
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVL K+G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 225 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRF 404
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE NDE L+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 405 KVVKVANVSLLALYKEKKERP 467
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 235 bits (575), Expect = 2e-62
Identities = 107/143 (74%), Positives = 121/143 (84%)
Frame = +3
Query: 45 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 224
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVL K+G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 225 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRF 404
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE NDE L+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 405 KVVKVANVSLLALYKEKKERPRS 473
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 140 bits (340), Expect = 5e-34
Identities = 64/102 (62%), Positives = 75/102 (73%)
Frame = +3
Query: 51 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAKQP 230
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVL K+G+ AKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 231 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAG 356
NSAI KC RVQL+KNGKK+ AFVP DGCLN I+ N+ V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 336 DEXLVAGFGRKGHAVGDIPGVRFKVVK 416
DE L++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 147 KWKANPFGGASHAKGIVLXKVGVXAKQPNSAIRKC 251
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 104 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 202
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>10_07_0138 + 13325418-13325954
Length = 178
Score = 24.6 bits (51), Expect(2) = 7.1
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -1
Query: 106 RCSRRWFTCLRAVRIP-RGLPIWIARHQSATDGKRG 2
RCSRRW R R R +W + DG RG
Sbjct: 100 RCSRRWRRSWRRRRCSRRWRRLWTSGDAHGGDGGRG 135
Score = 21.4 bits (43), Expect(2) = 7.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 112 AHRCSRRW 89
A RCSRRW
Sbjct: 84 ARRCSRRW 91
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -2
Query: 504 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 355
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = -1
Query: 310 PSRGTNAVTFFPFLMSCTRTHLRMAELGCLAXTPTXSRTMPFA*DAPPKGLAF------H 149
P G N + L+ + A +G +A T + + T F GL H
Sbjct: 518 PFGGGNENPHYDKLVQMVEDNEFDAAIGDIAITMSRTVTTDFTQPFIESGLVILAPVKKH 577
Query: 148 FVPMWAFLNSLSAHRCSRRWFTCLRAVRI 62
V WAFL + C F C+ V++
Sbjct: 578 IVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,135
Number of Sequences: 37544
Number of extensions: 343715
Number of successful extensions: 821
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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