Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E11
(547 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 258 1e-68
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 258 1e-68
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 258 1e-68
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 114 2e-25
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 50 7e-06
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 50 7e-06
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 50 7e-06
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 50 7e-06
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 50 7e-06
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 50 7e-06
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 258 bits (631), Expect = 1e-68
Identities = 122/143 (85%), Positives = 130/143 (90%)
Frame = +3
Query: 45 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 224
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 225 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRF 404
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IE NDE LVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 405 KVVKVANVSLLALYKEKKERPRS 473
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 258 bits (631), Expect = 1e-68
Identities = 122/143 (85%), Positives = 130/143 (90%)
Frame = +3
Query: 45 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 224
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 225 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRF 404
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IE NDE LVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 405 KVVKVANVSLLALYKEKKERPRS 473
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 258 bits (631), Expect = 1e-68
Identities = 122/143 (85%), Positives = 130/143 (90%)
Frame = +3
Query: 45 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 224
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 225 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRF 404
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IE NDE LVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 405 KVVKVANVSLLALYKEKKERPRS 473
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 114 bits (275), Expect = 2e-25
Identities = 54/59 (91%), Positives = 54/59 (91%)
Frame = +3
Query: 294 FVPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 470
FVP DGCLN IE NDE LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 49.6 bits (113), Expect = 7e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +3
Query: 153 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEX 332
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 333 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 416
+ LV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 49.6 bits (113), Expect = 7e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +3
Query: 153 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEX 332
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 333 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 416
+ LV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 49.6 bits (113), Expect = 7e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +3
Query: 153 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEX 332
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 333 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 416
+ LV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 49.6 bits (113), Expect = 7e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +3
Query: 153 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEX 332
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 333 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 416
+ LV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 49.6 bits (113), Expect = 7e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +3
Query: 153 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEX 332
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 333 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 416
+ LV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 49.6 bits (113), Expect = 7e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = +3
Query: 153 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEX 332
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 333 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 416
+ LV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,076,956
Number of Sequences: 237096
Number of extensions: 1778723
Number of successful extensions: 5816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5816
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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