Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E08
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    27   1.9  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   3.3  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    26   4.4  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   5.8  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.7  

>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 474 MLEVEVMRQDGTCAPDSM 527
           MLEVE  RQ+  C PDS+
Sbjct: 197 MLEVEEDRQENICTPDSL 214


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = +3

Query: 282 FLKKTFTHSVAKFYCAKRMTPSFNPLMFNSYRRFYSXGEXDELQTSINTICKGNAELEKK 461
           FLK  F    +KF         + P  F    R Y  G+      + N  C G A+ + K
Sbjct: 688 FLKSWFADP-SKFVDRTPENAPWKPYWFGIRDRMYRSGDLGRYLPTGNVECSGRADDQIK 746

Query: 462 LRILMLEV 485
           +R   +E+
Sbjct: 747 IRGFRIEL 754


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 512 TCTILPHYFNFQHQNPQL 459
           TCT L H  + QH  PQL
Sbjct: 42  TCTTLNHLLSAQHTRPQL 59


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   ILTXYNLCHGPWIIMDYT*YLLKQIQKLTLFMFIK 107
           ++  Y  C+  W IMD+  +   +++   +F FI+
Sbjct: 535 VIKAYQGCNDDWNIMDHFDFAKPELKMFKIFNFIR 569


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 151 HLWLI*DIANRFKVRLININSVNF 80
           HLW++ ++ +  K   IN+N +N+
Sbjct: 878 HLWVLANLRDYVKKTKINLNGINY 901


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,176
Number of Sequences: 5004
Number of extensions: 39087
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)