Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E08
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036     31   0.48 
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654...    27   7.8  

>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
          Length = 762

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 441 NAELEKKLRILMLEVEVMRQDGTCAPDSMNTTQWKHLL 554
           NAEL++KL+   LE ++M  + TC      T QWK  L
Sbjct: 583 NAELQEKLK--HLEAQLMEANKTCEEAKAETFQWKEKL 618


>03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,
            6541815-6543215,6543268-6543357,6543800-6544515,
            6545549-6545707,6545877-6546186,6546794-6546861,
            6547354-6547896
          Length = 1247

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 444  AELEKKLRILMLEVEVMRQDGTCAPDSMNTTQWKHL 551
            A ++  +RIL L+ E+++ D   APD   T  ++ L
Sbjct: 1055 AHIDADIRILNLQEEIVQHDPEYAPDKYTTKPFRPL 1090


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,737
Number of Sequences: 37544
Number of extensions: 198573
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)